PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
pax3a | dr11_v1_chr2_-_47431205_47431205 | -0.80 | 3.6e-05 | Click! |
pax3b | dr11_v1_chr15_-_42206890_42206890 | 0.73 | 4.1e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_-_59348118 Show fit | 6.03 |
ENSDART00000170901
|
cytochrome P450, family 3, subfamily A, polypeptide 65 |
|
chr8_-_25247284 Show fit | 5.10 |
ENSDART00000132697
|
guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 |
|
chr7_-_24520866 Show fit | 4.11 |
ENSDART00000077039
|
fatty acid amide hydrolase 2b |
|
chr9_+_22080122 Show fit | 3.38 |
ENSDART00000065956
ENSDART00000136014 |
crystallin, gamma M2e |
|
chr13_+_1542493 Show fit | 3.33 |
ENSDART00000181968
|
|
|
chr18_+_26829086 Show fit | 3.32 |
ENSDART00000098356
|
solute carrier family 28 (concentrative nucleoside transporter), member 1 |
|
chr12_-_20796430 Show fit | 3.27 |
ENSDART00000064339
|
NME/NM23 nucleoside diphosphate kinase 2a |
|
chr23_-_6641223 Show fit | 3.17 |
ENSDART00000023793
|
major intrinsic protein of lens fiber b |
|
chr2_-_5502256 Show fit | 3.13 |
ENSDART00000193037
|
S-antigen; retina and pineal gland (arrestin) a |
|
chr18_+_43365890 Show fit | 3.07 |
ENSDART00000173113
|
si:ch211-129p13.1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.3 | GO:0009410 | response to xenobiotic stimulus(GO:0009410) |
0.4 | 5.7 | GO:1901642 | nucleoside transport(GO:0015858) nucleoside transmembrane transport(GO:1901642) |
0.0 | 5.4 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.5 | 5.1 | GO:0050907 | detection of chemical stimulus involved in sensory perception(GO:0050907) |
0.0 | 4.1 | GO:0016042 | lipid catabolic process(GO:0016042) |
0.2 | 3.5 | GO:0070328 | acylglycerol homeostasis(GO:0055090) triglyceride homeostasis(GO:0070328) |
0.2 | 3.3 | GO:0006228 | UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051) |
0.4 | 3.2 | GO:0006833 | water transport(GO:0006833) |
0.3 | 3.1 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.2 | 2.9 | GO:0007035 | vacuolar acidification(GO:0007035) pH reduction(GO:0045851) intracellular pH reduction(GO:0051452) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 8.2 | GO:0001917 | photoreceptor inner segment(GO:0001917) |
0.0 | 3.0 | GO:0005884 | actin filament(GO:0005884) |
0.3 | 2.9 | GO:0000220 | vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220) |
0.8 | 2.3 | GO:0005592 | collagen type XI trimer(GO:0005592) |
0.0 | 1.9 | GO:0005795 | Golgi stack(GO:0005795) |
0.2 | 1.6 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
0.1 | 1.3 | GO:0030127 | COPII vesicle coat(GO:0030127) |
0.0 | 1.2 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.1 | 1.1 | GO:0097225 | sperm midpiece(GO:0097225) |
0.1 | 1.0 | GO:0005750 | mitochondrial respiratory chain complex III(GO:0005750) respiratory chain complex III(GO:0045275) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.7 | GO:0008395 | steroid hydroxylase activity(GO:0008395) |
0.1 | 6.2 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 5.7 | GO:0015370 | solute:sodium symporter activity(GO:0015370) |
0.2 | 5.6 | GO:0031683 | G-protein beta/gamma-subunit complex binding(GO:0031683) |
0.0 | 4.5 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.0 | 4.1 | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides(GO:0016811) |
0.7 | 3.5 | GO:0070644 | vitamin D response element binding(GO:0070644) |
0.1 | 3.3 | GO:0004550 | nucleoside diphosphate kinase activity(GO:0004550) |
0.4 | 3.2 | GO:0015250 | water channel activity(GO:0015250) |
0.0 | 3.0 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 5.1 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.2 | 3.5 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.1 | 2.3 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 1.9 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.0 | 0.5 | ST GA13 PATHWAY | G alpha 13 Pathway |
0.0 | 0.3 | PID IL23 PATHWAY | IL23-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.9 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
0.2 | 5.1 | REACTOME G PROTEIN ACTIVATION | Genes involved in G-protein activation |
0.1 | 3.5 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.0 | 2.3 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.3 | 1.8 | REACTOME ORGANIC CATION ANION ZWITTERION TRANSPORT | Genes involved in Organic cation/anion/zwitterion transport |
0.1 | 1.6 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.0 | 1.3 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
0.1 | 1.2 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
0.0 | 1.0 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
0.0 | 0.7 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |