PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
pbx4 | dr11_v1_chr3_+_53052769_53052769 | 0.25 | 3.1e-01 | Click! |
pdx1 | dr11_v1_chr24_+_21684189_21684189 | -0.20 | 4.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_36243774 Show fit | 5.31 |
ENSDART00000023323
|
zgc:172270 |
|
chr12_-_11457625 Show fit | 3.70 |
ENSDART00000012318
|
HtrA serine peptidase 1b |
|
chr18_+_13792490 Show fit | 3.65 |
ENSDART00000136754
|
cadherin 13, H-cadherin (heart) |
|
chr24_+_38301080 Show fit | 3.44 |
ENSDART00000105672
|
myosin binding protein C, fast type b |
|
chr20_+_1088658 Show fit | 3.05 |
ENSDART00000162991
|
|
|
chr14_+_35237613 Show fit | 2.96 |
ENSDART00000163465
|
early B cell factor 3a |
|
chr24_-_6898302 Show fit | 2.56 |
ENSDART00000158646
|
dipeptidyl-peptidase 6a |
|
chr4_-_16333944 Show fit | 2.01 |
ENSDART00000079523
|
epiphycan |
|
chr1_-_26023678 Show fit | 1.95 |
ENSDART00000054202
|
si:ch211-145b13.5 |
|
chr12_+_39685485 Show fit | 1.92 |
ENSDART00000163403
|
|
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 5.3 | GO:0070836 | membrane raft assembly(GO:0001765) plasma membrane raft assembly(GO:0044854) plasma membrane raft organization(GO:0044857) caveola assembly(GO:0070836) |
0.1 | 4.6 | GO:1901379 | regulation of potassium ion transmembrane transport(GO:1901379) |
0.5 | 3.6 | GO:1902262 | apoptotic process involved in patterning of blood vessels(GO:1902262) |
0.5 | 1.9 | GO:0015867 | intracellular nucleoside transport(GO:0015859) purine nucleoside transmembrane transport(GO:0015860) purine nucleotide transport(GO:0015865) ATP transport(GO:0015867) purine ribonucleotide transport(GO:0015868) adenine nucleotide transport(GO:0051503) mitochondrial ATP transmembrane transport(GO:1990544) |
0.0 | 1.8 | GO:0006937 | regulation of muscle contraction(GO:0006937) |
0.5 | 1.6 | GO:0090184 | regulation of morphogenesis of a branching structure(GO:0060688) positive regulation of mesonephros development(GO:0061213) regulation of mesonephros development(GO:0061217) regulation of kidney development(GO:0090183) positive regulation of kidney development(GO:0090184) regulation of branching involved in ureteric bud morphogenesis(GO:0090189) positive regulation of branching involved in ureteric bud morphogenesis(GO:0090190) interneuron axon guidance(GO:0097376) spinal cord interneuron axon guidance(GO:0097377) dorsal spinal cord interneuron axon guidance(GO:0097378) |
0.2 | 1.6 | GO:0006833 | water transport(GO:0006833) |
0.1 | 1.6 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.0 | 1.6 | GO:0051209 | release of sequestered calcium ion into cytosol(GO:0051209) |
0.0 | 1.6 | GO:0031102 | neuron projection regeneration(GO:0031102) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.3 | GO:0005901 | caveola(GO:0005901) plasma membrane raft(GO:0044853) |
0.1 | 5.0 | GO:0034705 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
0.0 | 2.8 | GO:0016342 | catenin complex(GO:0016342) |
0.1 | 2.2 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 1.7 | GO:0031941 | filamentous actin(GO:0031941) |
0.0 | 1.7 | GO:0030426 | growth cone(GO:0030426) |
0.3 | 1.6 | GO:0042584 | chromaffin granule membrane(GO:0042584) |
0.2 | 1.5 | GO:0000172 | ribonuclease MRP complex(GO:0000172) |
0.2 | 1.5 | GO:0005790 | smooth endoplasmic reticulum(GO:0005790) |
0.0 | 1.4 | GO:0014069 | postsynaptic density(GO:0014069) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.4 | GO:0008239 | dipeptidyl-peptidase activity(GO:0008239) |
0.1 | 3.7 | GO:0005520 | insulin-like growth factor binding(GO:0005520) |
0.0 | 3.7 | GO:0060090 | binding, bridging(GO:0060090) |
0.0 | 3.3 | GO:0045296 | cadherin binding(GO:0045296) |
0.2 | 2.2 | GO:0015250 | water channel activity(GO:0015250) |
0.5 | 1.9 | GO:0005471 | ATP:ADP antiporter activity(GO:0005471) |
0.2 | 1.8 | GO:0030172 | troponin C binding(GO:0030172) troponin I binding(GO:0031013) |
0.1 | 1.7 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
0.1 | 1.6 | GO:0051393 | muscle alpha-actinin binding(GO:0051371) alpha-actinin binding(GO:0051393) |
0.0 | 1.6 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.0 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.8 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
0.0 | 0.5 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.0 | 0.2 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.6 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.0 | 1.6 | REACTOME INTERACTIONS OF VPR WITH HOST CELLULAR PROTEINS | Genes involved in Interactions of Vpr with host cellular proteins |
0.1 | 1.4 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.0 | 1.0 | REACTOME STEROID HORMONES | Genes involved in Steroid hormones |
0.1 | 0.8 | REACTOME ROLE OF DCC IN REGULATING APOPTOSIS | Genes involved in Role of DCC in regulating apoptosis |
0.1 | 0.6 | REACTOME PLATELET ADHESION TO EXPOSED COLLAGEN | Genes involved in Platelet Adhesion to exposed collagen |
0.0 | 0.6 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |
0.1 | 0.4 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |
0.1 | 0.4 | REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS | Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors) |
0.0 | 0.4 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |