PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
pgr | dr11_v1_chr18_+_41820039_41820039 | 0.37 | 1.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_-_59348118 Show fit | 3.04 |
ENSDART00000170901
|
cytochrome P450, family 3, subfamily A, polypeptide 65 |
|
chr9_-_22272181 Show fit | 2.23 |
ENSDART00000113174
|
crystallin, gamma M2d7 |
|
chr21_+_25187210 Show fit | 2.16 |
ENSDART00000101147
ENSDART00000167528 |
si:dkey-183i3.5 |
|
chr1_+_51615672 Show fit | 1.91 |
ENSDART00000165117
|
zgc:165656 |
|
chr17_-_6730247 Show fit | 1.90 |
ENSDART00000031091
|
visinin-like 1b |
|
chr1_+_7538909 Show fit | 1.88 |
ENSDART00000148276
|
myosin, light polypeptide 3, skeletal muscle |
|
chr3_+_16612574 Show fit | 1.81 |
ENSDART00000104481
|
solute carrier family 17 (vesicular glutamate transporter), member 7a |
|
chr24_-_27473771 Show fit | 1.78 |
ENSDART00000139874
|
CX chemokine ligand 34b, duplicate 11 |
|
chr5_+_45677781 Show fit | 1.72 |
ENSDART00000163120
ENSDART00000126537 |
group-specific component (vitamin D binding protein) |
|
chr9_-_43001898 Show fit | 1.70 |
ENSDART00000138515
|
titin, tandem duplicate 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.5 | GO:0034765 | regulation of ion transmembrane transport(GO:0034765) |
0.0 | 3.9 | GO:0009410 | response to xenobiotic stimulus(GO:0009410) |
0.0 | 3.3 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.0 | 3.1 | GO:0007601 | visual perception(GO:0007601) |
0.1 | 2.6 | GO:1903670 | regulation of sprouting angiogenesis(GO:1903670) |
0.1 | 2.3 | GO:0048769 | sarcomerogenesis(GO:0048769) |
0.0 | 2.2 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.5 | 2.0 | GO:0015722 | canalicular bile acid transport(GO:0015722) bile acid secretion(GO:0032782) |
0.2 | 1.8 | GO:0098700 | neurotransmitter loading into synaptic vesicle(GO:0098700) |
0.1 | 1.7 | GO:0051180 | vitamin transport(GO:0051180) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.7 | GO:0016459 | myosin complex(GO:0016459) |
0.0 | 4.4 | GO:0031012 | extracellular matrix(GO:0031012) |
0.0 | 2.9 | GO:0030141 | secretory granule(GO:0030141) |
0.1 | 2.5 | GO:0035861 | site of double-strand break(GO:0035861) |
0.1 | 2.2 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 2.2 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 2.1 | GO:0031903 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.0 | 1.9 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.1 | 1.8 | GO:0098563 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
0.0 | 1.6 | GO:0016324 | apical plasma membrane(GO:0016324) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.1 | GO:0003774 | motor activity(GO:0003774) |
0.0 | 3.5 | GO:0008395 | steroid hydroxylase activity(GO:0008395) |
0.0 | 3.1 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.2 | 2.5 | GO:0003906 | DNA-(apurinic or apyrimidinic site) lyase activity(GO:0003906) |
0.0 | 2.5 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 2.5 | GO:0005249 | voltage-gated potassium channel activity(GO:0005249) |
0.5 | 2.0 | GO:0015126 | canalicular bile acid transmembrane transporter activity(GO:0015126) bile acid-exporting ATPase activity(GO:0015432) |
0.1 | 1.8 | GO:0005326 | neurotransmitter transporter activity(GO:0005326) |
0.6 | 1.7 | GO:0005499 | vitamin D binding(GO:0005499) |
0.4 | 1.7 | GO:0005527 | macrolide binding(GO:0005527) FK506 binding(GO:0005528) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.0 | 1.0 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 1.0 | ST GA13 PATHWAY | G alpha 13 Pathway |
0.0 | 1.0 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.0 | 0.8 | PID P73PATHWAY | p73 transcription factor network |
0.1 | 0.7 | ST IL 13 PATHWAY | Interleukin 13 (IL-13) Pathway |
0.0 | 0.6 | PID EPHA FWDPATHWAY | EPHA forward signaling |
0.0 | 0.5 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.0 | 0.4 | PID GLYPICAN 1PATHWAY | Glypican 1 network |
0.0 | 0.4 | SA B CELL RECEPTOR COMPLEXES | Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.6 | REACTOME STEROID HORMONES | Genes involved in Steroid hormones |
0.0 | 1.1 | REACTOME POTASSIUM CHANNELS | Genes involved in Potassium Channels |
0.1 | 1.0 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.1 | 0.9 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
0.0 | 0.9 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.0 | 0.9 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 0.8 | REACTOME KERATAN SULFATE DEGRADATION | Genes involved in Keratan sulfate degradation |
0.0 | 0.6 | REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS | Genes involved in Glycogen breakdown (glycogenolysis) |
0.0 | 0.6 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
0.0 | 0.5 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |