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PRJEB1986: zebrafish developmental stages transcriptome

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Results for phf21ab+rfx5

Z-value: 0.43

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Transcription factors associated with phf21ab+rfx5

Gene Symbol Gene ID Gene Info
phf21ab
ENSDARG00000021378 PHD finger protein 21Ab
rfx5
ENSDARG00000063258 regulatory factor X, 5

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
phf21abdr11_v1_chr25_-_7723685_7723685-0.361.3e-01Click!
rfx5dr11_v1_chr19_-_7495006_74950060.262.8e-01Click!

Activity profile of phf21ab+rfx5 motif

Sorted Z-values of phf21ab+rfx5 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr2_-_42958619 0.89 ENSDART00000144317
oc90
otoconin 90
chr19_-_27588842 0.55 ENSDART00000121643
si:dkeyp-46h3.2
si:dkeyp-46h3.2
chr15_+_46386261 0.48 ENSDART00000191793
igsf11
immunoglobulin superfamily member 11
chr13_-_17860307 0.48 ENSDART00000135920
ENSDART00000054579
march8
membrane-associated ring finger (C3HC4) 8
chr15_+_32411660 0.44 ENSDART00000113443
si:dkey-285b23.4
si:dkey-285b23.4
chr19_-_45534392 0.39 ENSDART00000163920
trps1
trichorhinophalangeal syndrome I
chr6_-_54348568 0.37 ENSDART00000156501
zgc:101577
zgc:101577
chr21_+_33459524 0.35 ENSDART00000053205
cd74b
CD74 molecule, major histocompatibility complex, class II invariant chain b
chr15_-_17619306 0.34 ENSDART00000184011
adamts15b
ADAM metallopeptidase with thrombospondin type 1 motif, 15b
chr13_-_16066997 0.34 ENSDART00000184790
SPATA48
spermatogenesis associated 48
chr1_-_7570181 0.32 ENSDART00000103588
mxa
myxovirus (influenza) resistance A
chr5_+_32141790 0.31 ENSDART00000041504
tescb
tescalcin b
chr11_+_45448212 0.30 ENSDART00000173341
sos1
son of sevenless homolog 1 (Drosophila)
chr18_-_8579907 0.29 ENSDART00000147284
FRMD4A
si:ch211-220f12.1
chr10_-_43294933 0.29 ENSDART00000062631
hapln1b
hyaluronan and proteoglycan link protein 1b
chr16_-_13516745 0.25 ENSDART00000145410
si:dkeyp-69b9.3
si:dkeyp-69b9.3
chr18_-_21047007 0.25 ENSDART00000162702
igf1ra
insulin-like growth factor 1a receptor
chr5_+_38662125 0.24 ENSDART00000136949
si:dkey-58f10.13
si:dkey-58f10.13
chr21_-_17290941 0.24 ENSDART00000147993
gfi1b
growth factor independent 1B transcription repressor
chr4_+_23127284 0.22 ENSDART00000122675
mdm2
MDM2 oncogene, E3 ubiquitin protein ligase
chr10_-_36618674 0.22 ENSDART00000135302
rsf1b.1
remodeling and spacing factor 1b, tandem duplicate 1
chr8_-_51635930 0.18 ENSDART00000015833
npy8br
neuropeptide Y receptor Y8b
chr1_+_34203817 0.18 ENSDART00000191432
ENSDART00000046094
arl6
ADP-ribosylation factor-like 6
chr3_-_8873716 0.17 ENSDART00000171798
znf1150
zinc finger protein 1150
chr9_+_20780813 0.17 ENSDART00000142787
fam46c
family with sequence similarity 46, member C
chr20_+_36682051 0.16 ENSDART00000130513
ncoa1
nuclear receptor coactivator 1
chr10_-_37072776 0.15 ENSDART00000110835
myo18aa
myosin XVIIIAa
chr6_-_40352215 0.15 ENSDART00000103992
ttll3
tubulin tyrosine ligase-like family, member 3
chr8_-_36412936 0.15 ENSDART00000159276
si:zfos-2070c2.3
si:zfos-2070c2.3
chr18_+_8339596 0.14 ENSDART00000183323
ENSDART00000185397
BX276107.1

chr11_+_1805421 0.14 ENSDART00000173143
lrp1aa
low density lipoprotein receptor-related protein 1Aa
chr19_-_7110617 0.14 ENSDART00000104838
psmb8a
proteasome subunit beta 8A
chr14_+_6954579 0.14 ENSDART00000060998
nme5
NME/NM23 family member 5
chr15_+_24388782 0.14 ENSDART00000191661
ENSDART00000179995
ENSDART00000111226
sez6b
seizure related 6 homolog b
chr9_-_31090593 0.14 ENSDART00000089136
gpr18
G protein-coupled receptor 18
chr7_-_3011514 0.13 ENSDART00000169589
zgc:171695
zgc:171695
chr7_+_56889879 0.12 ENSDART00000039810
myo9aa
myosin IXAa
chr5_+_58397646 0.12 ENSDART00000180759
HEPACAM
hepatic and glial cell adhesion molecule
chr25_+_27873671 0.11 ENSDART00000088817
iqub
IQ motif and ubiquitin domain containing
chr18_-_3552414 0.11 ENSDART00000163762
ENSDART00000165434
ENSDART00000161197
ENSDART00000166841
ENSDART00000170260
dcun1d5
DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
chr7_+_29863548 0.11 ENSDART00000136555
ENSDART00000134068
tln2a
talin 2a
chr7_-_56606752 0.11 ENSDART00000138714
sult5a1
sulfotransferase family 5A, member 1
chr7_-_55051692 0.10 ENSDART00000170637
tpcn2
two pore segment channel 2
chr20_-_28931901 0.10 ENSDART00000153082
ENSDART00000046042
susd6
sushi domain containing 6
chr8_-_22273819 0.10 ENSDART00000121513
nphp4
nephronophthisis 4
chr4_-_75678082 0.09 ENSDART00000180201
si:dkey-165o8.1
si:dkey-165o8.1
chr12_+_32078056 0.09 ENSDART00000152924
stxbp4
syntaxin binding protein 4
chr14_-_16476863 0.09 ENSDART00000089021
canx
calnexin
chr8_+_45294767 0.08 ENSDART00000191527
ubap2b
ubiquitin associated protein 2b
chr4_-_43613424 0.07 ENSDART00000171524
si:dkey-16p6.4
si:dkey-16p6.4
chr9_-_41077934 0.07 ENSDART00000100342
ankar
ankyrin and armadillo repeat containing
chr25_+_27873836 0.07 ENSDART00000163801
iqub
IQ motif and ubiquitin domain containing
chr23_-_45539306 0.06 ENSDART00000161913
CU681841.1

chr2_-_49978227 0.06 ENSDART00000142835
hecw1b
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1b
chr21_+_40239192 0.06 ENSDART00000135857
or115-9
odorant receptor, family F, subfamily 115, member 9
chr4_+_30788743 0.06 ENSDART00000184557
si:dkey-178j11.5
si:dkey-178j11.5
chr3_-_7912661 0.05 ENSDART00000161400
trim35-21
tripartite motif containing 35-21
chr20_+_9211237 0.05 ENSDART00000139527
si:ch211-59d15.4
si:ch211-59d15.4
chr18_+_49411417 0.04 ENSDART00000028944
LRFN3
zmp:0000001073
chr4_-_36032177 0.04 ENSDART00000170143
zgc:174180
zgc:174180
chr13_+_22821647 0.03 ENSDART00000109798
ENSDART00000144094
dna2
DNA replication helicase/nuclease 2
chr4_-_49982134 0.03 ENSDART00000186050
si:dkey-156k2.4
si:dkey-156k2.4
chr4_+_33095657 0.03 ENSDART00000150647
znf1112
zinc finger protein 1112
chr4_+_76906112 0.03 ENSDART00000180696
si:dkey-240n22.6
si:dkey-240n22.6
chr23_+_21964325 0.03 ENSDART00000140208
ENSDART00000135690
lactbl1a
lactamase, beta-like 1a
chr19_+_7001170 0.03 ENSDART00000110366
zbtb22b
zinc finger and BTB domain containing 22b
chr10_-_22797959 0.03 ENSDART00000183269
pcolcea
procollagen C-endopeptidase enhancer a
chr7_-_26049282 0.02 ENSDART00000136389
ENSDART00000101124
rnaseka
ribonuclease, RNase K a
chr19_+_43297546 0.02 ENSDART00000168002
laptm5
lysosomal protein transmembrane 5
chr4_-_36033377 0.02 ENSDART00000164348
ENSDART00000187058
zgc:174180
zgc:174180
chr4_+_76440462 0.02 ENSDART00000174138
si:dkey-16p6.1
si:dkey-16p6.1
chr8_-_32878228 0.02 ENSDART00000110897
si:dkey-56i24.1
si:dkey-56i24.1
chr8_+_20415824 0.02 ENSDART00000009081
ENSDART00000145444
mob3a
MOB kinase activator 3A
chr22_+_34710036 0.02 ENSDART00000025820
hoga1
4-hydroxy-2-oxoglutarate aldolase 1
chr23_+_41831224 0.02 ENSDART00000171885
scp2b
sterol carrier protein 2b
chr12_+_17620067 0.01 ENSDART00000073599
rsph10b
radial spoke head 10 homolog B
chr20_+_3277620 0.01 ENSDART00000067397
ENSDART00000135194
ndufaf7
NADH dehydrogenase (ubiquinone) complex I, assembly factor 7
chr7_+_26049818 0.01 ENSDART00000173611
si:dkey-6n21.12
si:dkey-6n21.12
chr15_+_1766734 0.01 ENSDART00000168250
cul3b
cullin 3b
chr15_-_38129845 0.01 ENSDART00000057095
si:dkey-24p1.1
si:dkey-24p1.1
chr10_+_36092564 0.01 ENSDART00000086490
smyd4
SET and MYND domain containing 4
chr1_+_494297 0.00 ENSDART00000108579
ENSDART00000146732
blzf1
basic leucine zipper nuclear factor 1
chr20_+_43396318 0.00 ENSDART00000060910
pimr138
Pim proto-oncogene, serine/threonine kinase, related 138
chr16_-_47301376 0.00 ENSDART00000169697
mios
missing oocyte, meiosis regulator, homolog (Drosophila)

Network of associatons between targets according to the STRING database.

First level regulatory network of phf21ab+rfx5

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0002495 antigen processing and presentation of peptide antigen via MHC class II(GO:0002495)
0.1 0.3 GO:0060907 macrophage cytokine production(GO:0010934) regulation of macrophage cytokine production(GO:0010935) positive regulation of macrophage cytokine production(GO:0060907) negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage(GO:1902230)
0.1 0.9 GO:0032309 icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) arachidonate transport(GO:1903963)
0.1 0.3 GO:0051145 smooth muscle cell differentiation(GO:0051145)
0.0 0.1 GO:1902176 regulation of oxidative stress-induced intrinsic apoptotic signaling pathway(GO:1902175) negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway(GO:1902176)
0.0 0.2 GO:1904036 negative regulation of epithelial cell apoptotic process(GO:1904036)
0.0 0.3 GO:0046685 response to arsenic-containing substance(GO:0046685)
0.0 0.5 GO:0097324 melanocyte migration(GO:0097324)
0.0 0.1 GO:0098529 neuromuscular junction development, skeletal muscle fiber(GO:0098529)
0.0 0.2 GO:0048009 insulin-like growth factor receptor signaling pathway(GO:0048009)
0.0 0.1 GO:2000290 regulation of myotome development(GO:2000290)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0031213 RSF complex(GO:0031213)
0.0 0.2 GO:0005899 insulin receptor complex(GO:0005899)
0.0 0.3 GO:0042613 MHC class II protein complex(GO:0042613)
0.0 0.3 GO:0098844 postsynaptic endocytic zone membrane(GO:0098844)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0070738 protein-glycine ligase activity(GO:0070735) tubulin-glycine ligase activity(GO:0070738)
0.0 0.2 GO:0005009 insulin-activated receptor activity(GO:0005009) insulin receptor substrate binding(GO:0043560)
0.0 0.9 GO:0004623 phospholipase A2 activity(GO:0004623)
0.0 0.8 GO:0042287 MHC protein binding(GO:0042287)
0.0 0.2 GO:0016922 ligand-dependent nuclear receptor binding(GO:0016922)
0.0 0.1 GO:0072345 NAADP-sensitive calcium-release channel activity(GO:0072345)
0.0 0.2 GO:0004983 neuropeptide Y receptor activity(GO:0004983)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 SA TRKA RECEPTOR The TrkA receptor binds nerve growth factor to activate MAP kinase pathways and promote cell growth.
0.0 0.2 PID RANBP2 PATHWAY Sumoylation by RanBP2 regulates transcriptional repression

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME SOS MEDIATED SIGNALLING Genes involved in SOS-mediated signalling
0.0 0.2 REACTOME AKT PHOSPHORYLATES TARGETS IN THE CYTOSOL Genes involved in AKT phosphorylates targets in the cytosol