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PRJEB1986: zebrafish developmental stages transcriptome

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Results for phox2ba

Z-value: 0.84

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Transcription factors associated with phox2ba

Gene Symbol Gene ID Gene Info
phox2ba
ENSDARG00000075330 paired like homeobox 2Ba

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
phox2badr11_v1_chr1_-_19079957_19079957-0.522.4e-02Click!

Activity profile of phox2ba motif

Sorted Z-values of phox2ba motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr5_-_38161033 3.28 ENSDART00000145907
gucy2d
guanylate cyclase 2D, retinal
chr4_+_76509294 2.93 ENSDART00000099899
ms4a17a.17
membrane-spanning 4-domains, subfamily A, member 17A.17
chr3_+_23247325 2.70 ENSDART00000114190
ppp1r9ba
protein phosphatase 1, regulatory subunit 9Ba
chr2_-_53481912 2.14 ENSDART00000189610
hsd11b1lb
hydroxysteroid (11-beta) dehydrogenase 1-like b
chr14_+_32839535 1.87 ENSDART00000168975
arr3b
arrestin 3b, retinal (X-arrestin)
chr14_-_45702721 1.79 ENSDART00000165727
si:dkey-226n24.1
si:dkey-226n24.1
chr11_+_13223625 1.69 ENSDART00000161275
abcb11b
ATP-binding cassette, sub-family B (MDR/TAP), member 11b
chr4_+_7841627 1.62 ENSDART00000037997
ucmaa
upper zone of growth plate and cartilage matrix associated a
chr15_-_23908605 1.57 ENSDART00000185578
usp32
ubiquitin specific peptidase 32
chr4_+_11375894 1.51 ENSDART00000190471
ENSDART00000143963
pcloa
piccolo presynaptic cytomatrix protein a
chr18_-_12612699 1.45 ENSDART00000090335
hipk2
homeodomain interacting protein kinase 2
chr21_+_44300689 1.43 ENSDART00000186298
ENSDART00000142810
gabra3
gamma-aminobutyric acid (GABA) A receptor, alpha 3
chr5_-_44829719 1.43 ENSDART00000019104
fbp2
fructose-1,6-bisphosphatase 2
chr24_-_25574967 1.34 ENSDART00000189828
cnksr2a
connector enhancer of kinase suppressor of Ras 2a
chr19_-_10373630 1.32 ENSDART00000131517
si:ch211-232m10.6
si:ch211-232m10.6
chr20_+_4060839 1.28 ENSDART00000178565
TRIM67
tripartite motif containing 67
chr14_-_2355833 1.17 ENSDART00000157677
PCDHGC3 (1 of many)
si:ch73-233f7.6
chr9_+_55321322 1.16 ENSDART00000111111
ENSDART00000191579
nlgn4b
neuroligin 4b
chr21_+_27189490 1.09 ENSDART00000125349
bada
BCL2 associated agonist of cell death a
chr13_-_34862452 1.07 ENSDART00000134573
ENSDART00000047552
sptlc3
serine palmitoyltransferase, long chain base subunit 3
chr12_+_32368574 1.05 ENSDART00000086389
ANKFN1
si:ch211-277e21.2
chr14_-_47314011 0.94 ENSDART00000178523
fstl5
follistatin-like 5
chr16_+_47428721 0.89 ENSDART00000180597
ENSDART00000032309
slc25a32b
solute carrier family 25 (mitochondrial folate carrier), member 32b
chr17_+_27134806 0.83 ENSDART00000151901
rps6ka1
ribosomal protein S6 kinase a, polypeptide 1
chr4_-_4834347 0.82 ENSDART00000141803
coa6
cytochrome c oxidase assembly factor 6
chr15_+_2500510 0.82 ENSDART00000180329
wdr53
WD repeat domain 53
chr2_-_51223658 0.76 ENSDART00000171770
pigrl4.2
polymeric immunoglobulin receptor-like 4.2
chr21_+_40239192 0.74 ENSDART00000135857
or115-9
odorant receptor, family F, subfamily 115, member 9
chr8_-_36370552 0.65 ENSDART00000097932
ENSDART00000148323
si:busm1-104n07.3
si:busm1-104n07.3
chr11_-_23459779 0.60 ENSDART00000183935
ENSDART00000184125
ENSDART00000193284
plekha6
pleckstrin homology domain containing, family A member 6
chr21_+_9689103 0.60 ENSDART00000165132
mapk10
mitogen-activated protein kinase 10
chr5_-_25236340 0.59 ENSDART00000162774
abca2
ATP-binding cassette, sub-family A (ABC1), member 2
chr4_-_4834617 0.56 ENSDART00000141539
coa6
cytochrome c oxidase assembly factor 6
chr4_-_77551860 0.56 ENSDART00000188176
AL935186.6

chr7_+_72460911 0.54 ENSDART00000160682
ENSDART00000168532
HECTD4
HECT domain E3 ubiquitin protein ligase 4
chr6_+_16493755 0.51 ENSDART00000126318
si:ch73-193c12.2
si:ch73-193c12.2
chr19_-_32600138 0.47 ENSDART00000052101
zgc:91944
zgc:91944
chr8_+_10862353 0.47 ENSDART00000140717
brpf3b
bromodomain and PHD finger containing, 3b
chr24_+_39227519 0.47 ENSDART00000184611
ENSDART00000193494
ENSDART00000190728
ENSDART00000168705
MPRIP
si:ch73-103b11.2
chr20_-_18736281 0.45 ENSDART00000142837
enpp5
ectonucleotide pyrophosphatase/phosphodiesterase 5
chr16_-_25519762 0.43 ENSDART00000146479
ENSDART00000142062
dtnbp1a
dystrobrevin binding protein 1a
chr8_+_10835456 0.42 ENSDART00000151388
mapk13
mitogen-activated protein kinase 13
chr13_+_42858228 0.38 ENSDART00000179763
cdh23
cadherin-related 23
chr9_-_54304684 0.32 ENSDART00000109512
il13
interleukin 13
chr17_-_20717845 0.32 ENSDART00000150037
ank3b
ankyrin 3b
chr10_+_26645953 0.30 ENSDART00000131482
adgrg4b
adhesion G protein-coupled receptor G4b
chr18_+_27000850 0.29 ENSDART00000188906
ENSDART00000086131
pik3c2a
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha
chr23_+_30048849 0.28 ENSDART00000126027
uts2a
urotensin 2, alpha
chr18_+_27598755 0.27 ENSDART00000193808
cd82b
CD82 molecule b
chr10_+_26646104 0.26 ENSDART00000187685
adgrg4b
adhesion G protein-coupled receptor G4b
chr5_-_44286987 0.25 ENSDART00000184112
si:ch73-337l15.2
si:ch73-337l15.2
chr19_+_10799929 0.21 ENSDART00000159152
lipea
lipase, hormone-sensitive a
chr15_+_5360407 0.20 ENSDART00000110420
or112-1
odorant receptor, family A, subfamily 112, member 1
chr1_-_33380011 0.20 ENSDART00000141347
ENSDART00000136383
cd99
CD99 molecule
chr7_-_30082931 0.20 ENSDART00000075600
tspan3b
tetraspanin 3b
chr18_-_5111449 0.20 ENSDART00000046902
pdcd10a
programmed cell death 10a
chr17_+_33719415 0.18 ENSDART00000132294
fut8a
fucosyltransferase 8a (alpha (1,6) fucosyltransferase)
chr8_-_11832771 0.18 ENSDART00000193412
ENSDART00000184720
ENSDART00000139947
rapgef1a
Rap guanine nucleotide exchange factor (GEF) 1a
chr19_-_32600638 0.17 ENSDART00000143497
zgc:91944
zgc:91944
chr17_+_30587333 0.16 ENSDART00000156500
nhsl1a
NHS-like 1a
chr6_+_11850359 0.14 ENSDART00000109552
ENSDART00000188139
ENSDART00000181499
ENSDART00000178269
baz2ba
bromodomain adjacent to zinc finger domain, 2Ba
chr25_+_32530976 0.13 ENSDART00000156190
ENSDART00000103324
scaper
S-phase cyclin A-associated protein in the ER
chr14_+_45702521 0.13 ENSDART00000112470
ccdc88b
coiled-coil domain containing 88B
chr15_+_25681044 0.12 ENSDART00000077853
hic1
hypermethylated in cancer 1
chr21_+_40225915 0.11 ENSDART00000048475
ENSDART00000174122
or115-12
odorant receptor, family F, subfamily 115, member 12
chr8_+_31821396 0.10 ENSDART00000077053
plcxd3
phosphatidylinositol-specific phospholipase C, X domain containing 3
chr24_-_27436319 0.10 ENSDART00000171489
si:dkey-25o1.7
si:dkey-25o1.7
chr2_+_55982940 0.08 ENSDART00000097753
ENSDART00000097751
nmrk2
nicotinamide riboside kinase 2
chr5_-_44286778 0.06 ENSDART00000146080
si:ch73-337l15.2
si:ch73-337l15.2
chr3_+_57788761 0.05 ENSDART00000149741
si:ch73-362i18.1
si:ch73-362i18.1
chr8_-_11835607 0.04 ENSDART00000183601
rapgef1a
Rap guanine nucleotide exchange factor (GEF) 1a

Network of associatons between targets according to the STRING database.

First level regulatory network of phox2ba

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.4 GO:0005985 sucrose metabolic process(GO:0005985) sucrose biosynthetic process(GO:0005986) disaccharide biosynthetic process(GO:0046351)
0.4 1.7 GO:0032782 canalicular bile acid transport(GO:0015722) bile acid secretion(GO:0032782)
0.2 1.5 GO:0045634 regulation of melanocyte differentiation(GO:0045634)
0.2 1.9 GO:0002031 G-protein coupled receptor internalization(GO:0002031)
0.2 1.5 GO:1904071 presynaptic active zone assembly(GO:1904071)
0.1 3.3 GO:0007168 receptor guanylyl cyclase signaling pathway(GO:0007168)
0.1 1.6 GO:0045667 regulation of osteoblast differentiation(GO:0045667)
0.1 0.4 GO:0060155 secretory granule organization(GO:0033363) platelet dense granule organization(GO:0060155)
0.1 1.1 GO:0034312 diol biosynthetic process(GO:0034312) sphingosine biosynthetic process(GO:0046512)
0.1 0.4 GO:0035678 neuromast hair cell morphogenesis(GO:0035678)
0.1 1.4 GO:0008535 respiratory chain complex IV assembly(GO:0008535)
0.1 0.2 GO:1903358 regulation of Golgi organization(GO:1903358)
0.1 1.4 GO:0051932 synaptic transmission, GABAergic(GO:0051932)
0.0 0.2 GO:0072672 neutrophil extravasation(GO:0072672) regulation of neutrophil extravasation(GO:2000389) positive regulation of neutrophil extravasation(GO:2000391)
0.0 0.5 GO:0044154 histone H3-K14 acetylation(GO:0044154)
0.0 2.7 GO:0019722 calcium-mediated signaling(GO:0019722)
0.0 0.2 GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process(GO:0036092)
0.0 0.2 GO:0019433 triglyceride catabolic process(GO:0019433)
0.0 0.2 GO:0036065 fucosylation(GO:0036065)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.5 GO:0098982 GABA-ergic synapse(GO:0098982)
0.1 1.1 GO:0031211 serine C-palmitoyltransferase complex(GO:0017059) endoplasmic reticulum palmitoyltransferase complex(GO:0031211)
0.1 0.2 GO:0090443 FAR/SIN/STRIPAK complex(GO:0090443)
0.0 1.4 GO:1902710 GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711)
0.0 1.5 GO:0016605 PML body(GO:0016605)
0.0 0.4 GO:0045009 melanosome membrane(GO:0033162) chitosome(GO:0045009)
0.0 0.5 GO:0070775 H3 histone acetyltransferase complex(GO:0070775) MOZ/MORF histone acetyltransferase complex(GO:0070776)
0.0 2.7 GO:0014069 postsynaptic density(GO:0014069)
0.0 0.4 GO:0032420 stereocilium(GO:0032420)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.4 GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132)
0.4 1.7 GO:0015432 canalicular bile acid transmembrane transporter activity(GO:0015126) bile acid-exporting ATPase activity(GO:0015432)
0.3 0.9 GO:0008517 folic acid transporter activity(GO:0008517)
0.2 3.3 GO:0004383 guanylate cyclase activity(GO:0004383)
0.2 1.1 GO:0004758 serine C-palmitoyltransferase activity(GO:0004758) C-palmitoyltransferase activity(GO:0016454)
0.1 1.5 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.1 1.4 GO:0008503 benzodiazepine receptor activity(GO:0008503) GABA-gated chloride ion channel activity(GO:0022851)
0.1 1.5 GO:0098882 structural constituent of presynaptic active zone(GO:0098882)
0.1 2.7 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.1 0.8 GO:0004711 ribosomal protein S6 kinase activity(GO:0004711)
0.1 0.6 GO:0004705 JUN kinase activity(GO:0004705) SAP kinase activity(GO:0016909)
0.1 0.6 GO:0003691 double-stranded telomeric DNA binding(GO:0003691)
0.0 0.5 GO:0043994 H3 histone acetyltransferase activity(GO:0010484) histone acetyltransferase activity (H3-K23 specific)(GO:0043994)
0.0 0.2 GO:0033878 hormone-sensitive lipase activity(GO:0033878)
0.0 0.4 GO:0004707 MAP kinase activity(GO:0004707)
0.0 0.2 GO:0035005 1-phosphatidylinositol-4-phosphate 3-kinase activity(GO:0035005)
0.0 0.1 GO:0050262 ribosylnicotinamide kinase activity(GO:0050262)
0.0 0.2 GO:0008417 fucosyltransferase activity(GO:0008417)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 3.3 PID CONE PATHWAY Visual signal transduction: Cones
0.0 0.3 ST IL 13 PATHWAY Interleukin 13 (IL-13) Pathway
0.0 0.4 PID P38 GAMMA DELTA PATHWAY Signaling mediated by p38-gamma and p38-delta
0.0 0.8 ST ERK1 ERK2 MAPK PATHWAY ERK1/ERK2 MAPK Pathway
0.0 0.6 ST GRANULE CELL SURVIVAL PATHWAY Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway.
0.0 1.5 PID P53 REGULATION PATHWAY p53 pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.4 REACTOME GABA A RECEPTOR ACTIVATION Genes involved in GABA A receptor activation
0.1 0.6 REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS Genes involved in Activation of the AP-1 family of transcription factors
0.1 0.8 REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF RAS Genes involved in CREB phosphorylation through the activation of Ras
0.1 0.4 REACTOME DSCAM INTERACTIONS Genes involved in DSCAM interactions
0.1 1.4 REACTOME GLUCONEOGENESIS Genes involved in Gluconeogenesis
0.0 0.6 REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS Genes involved in ABCA transporters in lipid homeostasis
0.0 0.2 REACTOME SYNTHESIS OF PIPS AT THE LATE ENDOSOME MEMBRANE Genes involved in Synthesis of PIPs at the late endosome membrane