PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
phox2ba | dr11_v1_chr1_-_19079957_19079957 | -0.52 | 2.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_-_38161033 Show fit | 3.28 |
ENSDART00000145907
|
guanylate cyclase 2D, retinal |
|
chr4_+_76509294 Show fit | 2.93 |
ENSDART00000099899
|
membrane-spanning 4-domains, subfamily A, member 17A.17 |
|
chr3_+_23247325 Show fit | 2.70 |
ENSDART00000114190
|
protein phosphatase 1, regulatory subunit 9Ba |
|
chr2_-_53481912 Show fit | 2.14 |
ENSDART00000189610
|
hydroxysteroid (11-beta) dehydrogenase 1-like b |
|
chr14_+_32839535 Show fit | 1.87 |
ENSDART00000168975
|
arrestin 3b, retinal (X-arrestin) |
|
chr14_-_45702721 Show fit | 1.79 |
ENSDART00000165727
|
si:dkey-226n24.1 |
|
chr11_+_13223625 Show fit | 1.69 |
ENSDART00000161275
|
ATP-binding cassette, sub-family B (MDR/TAP), member 11b |
|
chr4_+_7841627 Show fit | 1.62 |
ENSDART00000037997
|
upper zone of growth plate and cartilage matrix associated a |
|
chr15_-_23908605 Show fit | 1.57 |
ENSDART00000185578
|
ubiquitin specific peptidase 32 |
|
chr4_+_11375894 Show fit | 1.51 |
ENSDART00000190471
ENSDART00000143963 |
piccolo presynaptic cytomatrix protein a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.3 | GO:0007168 | receptor guanylyl cyclase signaling pathway(GO:0007168) |
0.0 | 2.7 | GO:0019722 | calcium-mediated signaling(GO:0019722) |
0.2 | 1.9 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.4 | 1.7 | GO:0032782 | canalicular bile acid transport(GO:0015722) bile acid secretion(GO:0032782) |
0.1 | 1.6 | GO:0045667 | regulation of osteoblast differentiation(GO:0045667) |
0.2 | 1.5 | GO:0045634 | regulation of melanocyte differentiation(GO:0045634) |
0.2 | 1.5 | GO:1904071 | presynaptic active zone assembly(GO:1904071) |
0.5 | 1.4 | GO:0005985 | sucrose metabolic process(GO:0005985) sucrose biosynthetic process(GO:0005986) disaccharide biosynthetic process(GO:0046351) |
0.1 | 1.4 | GO:0008535 | respiratory chain complex IV assembly(GO:0008535) |
0.1 | 1.4 | GO:0051932 | synaptic transmission, GABAergic(GO:0051932) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.7 | GO:0014069 | postsynaptic density(GO:0014069) |
0.2 | 1.5 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.0 | 1.5 | GO:0016605 | PML body(GO:0016605) |
0.0 | 1.4 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.1 | 1.1 | GO:0031211 | serine C-palmitoyltransferase complex(GO:0017059) endoplasmic reticulum palmitoyltransferase complex(GO:0031211) |
0.0 | 0.5 | GO:0070775 | H3 histone acetyltransferase complex(GO:0070775) MOZ/MORF histone acetyltransferase complex(GO:0070776) |
0.0 | 0.4 | GO:0045009 | melanosome membrane(GO:0033162) chitosome(GO:0045009) |
0.0 | 0.4 | GO:0032420 | stereocilium(GO:0032420) |
0.1 | 0.2 | GO:0090443 | FAR/SIN/STRIPAK complex(GO:0090443) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.3 | GO:0004383 | guanylate cyclase activity(GO:0004383) |
0.1 | 2.7 | GO:0008157 | protein phosphatase 1 binding(GO:0008157) |
0.4 | 1.7 | GO:0015432 | canalicular bile acid transmembrane transporter activity(GO:0015126) bile acid-exporting ATPase activity(GO:0015432) |
0.1 | 1.5 | GO:0001102 | RNA polymerase II activating transcription factor binding(GO:0001102) |
0.1 | 1.5 | GO:0098882 | structural constituent of presynaptic active zone(GO:0098882) |
0.5 | 1.4 | GO:0042132 | fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132) |
0.1 | 1.4 | GO:0008503 | benzodiazepine receptor activity(GO:0008503) GABA-gated chloride ion channel activity(GO:0022851) |
0.2 | 1.1 | GO:0004758 | serine C-palmitoyltransferase activity(GO:0004758) C-palmitoyltransferase activity(GO:0016454) |
0.3 | 0.9 | GO:0008517 | folic acid transporter activity(GO:0008517) |
0.1 | 0.8 | GO:0004711 | ribosomal protein S6 kinase activity(GO:0004711) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.3 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.0 | 1.5 | PID P53 REGULATION PATHWAY | p53 pathway |
0.0 | 0.8 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
0.0 | 0.6 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.0 | 0.4 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.0 | 0.3 | ST IL 13 PATHWAY | Interleukin 13 (IL-13) Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.4 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.1 | 1.4 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
0.1 | 0.8 | REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF RAS | Genes involved in CREB phosphorylation through the activation of Ras |
0.1 | 0.6 | REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS | Genes involved in Activation of the AP-1 family of transcription factors |
0.0 | 0.6 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
0.1 | 0.4 | REACTOME DSCAM INTERACTIONS | Genes involved in DSCAM interactions |
0.0 | 0.2 | REACTOME SYNTHESIS OF PIPS AT THE LATE ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the late endosome membrane |