PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
pitx2 | dr11_v1_chr14_+_36218072_36218072 | 0.59 | 8.2e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_35949936 Show fit | 3.90 |
ENSDART00000192583
|
|
|
chr2_-_31767827 Show fit | 3.40 |
ENSDART00000114928
|
actinodin2 |
|
chr20_+_9128829 Show fit | 3.36 |
ENSDART00000064144
ENSDART00000137450 |
bisphosphate nucleotidase 1 |
|
chr4_+_6643421 Show fit | 3.27 |
ENSDART00000099462
|
G protein-coupled receptor 85 |
|
chr6_-_54126463 Show fit | 2.82 |
ENSDART00000161059
|
tumor suppressor candidate 2a |
|
chr19_-_3193912 Show fit | 2.24 |
ENSDART00000133159
|
si:ch211-133n4.6 |
|
chr19_-_5345930 Show fit | 2.20 |
ENSDART00000066620
ENSDART00000151398 |
keratin type 1 c19e |
|
chr15_-_12319065 Show fit | 1.99 |
ENSDART00000162973
ENSDART00000170543 |
FXYD domain containing ion transport regulator 6 |
|
chr19_+_10339538 Show fit | 1.88 |
ENSDART00000151808
ENSDART00000151235 |
recoverin 3 |
|
chr23_+_3616224 Show fit | 1.87 |
ENSDART00000190917
|
si:dkey-9l20.3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 31.6 | GO:0007160 | cell-matrix adhesion(GO:0007160) |
0.2 | 4.6 | GO:0071545 | phosphorylated carbohydrate dephosphorylation(GO:0046838) inositol phosphate dephosphorylation(GO:0046855) inositol phosphate catabolic process(GO:0071545) |
0.0 | 3.4 | GO:0033333 | fin development(GO:0033333) |
0.6 | 2.8 | GO:0051881 | regulation of mitochondrial membrane potential(GO:0051881) |
0.2 | 1.9 | GO:0036368 | cone photoresponse recovery(GO:0036368) |
0.0 | 1.9 | GO:0051260 | protein homooligomerization(GO:0051260) |
0.1 | 1.8 | GO:0010996 | response to auditory stimulus(GO:0010996) |
0.1 | 1.8 | GO:0098943 | neurotransmitter receptor transport, postsynaptic endosome to lysosome(GO:0098943) |
0.0 | 1.7 | GO:2000649 | regulation of sodium ion transmembrane transporter activity(GO:2000649) |
0.1 | 1.6 | GO:0018149 | peptide cross-linking(GO:0018149) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.2 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 1.9 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.6 | 1.8 | GO:0060077 | inhibitory synapse(GO:0060077) |
0.0 | 1.8 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.0 | 1.5 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.0 | 1.4 | GO:0042734 | presynaptic membrane(GO:0042734) |
0.0 | 1.3 | GO:0005604 | basement membrane(GO:0005604) |
0.1 | 1.1 | GO:0045095 | keratin filament(GO:0045095) |
0.0 | 1.1 | GO:0048787 | presynaptic active zone membrane(GO:0048787) |
0.0 | 1.1 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.7 | GO:0008252 | nucleotidase activity(GO:0008252) |
0.0 | 3.7 | GO:0005245 | voltage-gated calcium channel activity(GO:0005245) |
0.1 | 3.0 | GO:0005178 | integrin binding(GO:0005178) |
0.0 | 2.0 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.4 | 1.8 | GO:0004385 | guanylate kinase activity(GO:0004385) |
0.1 | 1.7 | GO:0017080 | sodium channel regulator activity(GO:0017080) |
0.1 | 1.6 | GO:0003810 | protein-glutamine gamma-glutamyltransferase activity(GO:0003810) |
0.4 | 1.5 | GO:0016215 | stearoyl-CoA 9-desaturase activity(GO:0004768) acyl-CoA desaturase activity(GO:0016215) palmitoyl-CoA 9-desaturase activity(GO:0032896) |
0.1 | 1.5 | GO:0008327 | methyl-CpG binding(GO:0008327) |
0.1 | 1.5 | GO:0035591 | signaling adaptor activity(GO:0035591) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.4 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
0.0 | 0.7 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.0 | 0.7 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.0 | 0.7 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.0 | 0.7 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.0 | 0.3 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 4.4 | REACTOME CYTOSOLIC SULFONATION OF SMALL MOLECULES | Genes involved in Cytosolic sulfonation of small molecules |
0.1 | 1.3 | REACTOME AMINE DERIVED HORMONES | Genes involved in Amine-derived hormones |
0.1 | 0.8 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
0.0 | 0.8 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 0.7 | REACTOME PYRUVATE METABOLISM | Genes involved in Pyruvate metabolism |
0.0 | 0.7 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.0 | 0.6 | REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS | Genes involved in Glycogen breakdown (glycogenolysis) |
0.0 | 0.4 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.0 | 0.4 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
0.0 | 0.4 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |