PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
pknox2 | dr11_v1_chr10_-_31220558_31220558 | -0.25 | 2.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_+_26288301 Show fit | 3.15 |
ENSDART00000017668
|
polypyrimidine tract binding protein 1a |
|
chr15_-_20528494 Show fit | 2.85 |
ENSDART00000048423
|
translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) |
|
chr3_-_10312232 Show fit | 2.75 |
ENSDART00000081766
|
noggin 1 |
|
chr8_-_18613948 Show fit | 2.49 |
ENSDART00000089172
|
coproporphyrinogen oxidase |
|
chr14_-_41468892 Show fit | 2.25 |
ENSDART00000173099
ENSDART00000003170 |
MID1 interacting protein 1, like |
|
chr23_-_31060350 Show fit | 2.18 |
ENSDART00000145598
ENSDART00000191491 |
si:ch211-197l9.5 |
|
chr20_-_28433990 Show fit | 2.17 |
ENSDART00000182824
ENSDART00000193381 |
WD repeat domain 21 |
|
chr3_+_28576173 Show fit | 2.07 |
ENSDART00000151189
|
septin 12 |
|
chr12_-_48168135 Show fit | 2.06 |
ENSDART00000186624
|
phosphatase domain containing, paladin 1a |
|
chr6_+_14949950 Show fit | 2.02 |
ENSDART00000149202
ENSDART00000149949 |
POU class 3 homeobox 3b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.3 | GO:0048794 | swim bladder development(GO:0048794) |
0.8 | 3.1 | GO:0060467 | negative regulation of fertilization(GO:0060467) prevention of polyspermy(GO:0060468) cortical granule exocytosis(GO:0060471) |
0.3 | 2.8 | GO:0042664 | negative regulation of endodermal cell fate specification(GO:0042664) |
0.2 | 2.8 | GO:0030150 | protein import into mitochondrial matrix(GO:0030150) |
0.2 | 2.5 | GO:0006782 | protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501) |
0.0 | 2.2 | GO:0071166 | ribonucleoprotein complex localization(GO:0071166) |
0.0 | 2.1 | GO:0061640 | cytoskeleton-dependent cytokinesis(GO:0061640) |
0.1 | 1.9 | GO:0007271 | synaptic transmission, cholinergic(GO:0007271) |
0.0 | 1.9 | GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0000079) regulation of cyclin-dependent protein kinase activity(GO:1904029) |
0.2 | 1.8 | GO:0072498 | embryonic skeletal joint development(GO:0072498) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.9 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.3 | 2.8 | GO:0005744 | mitochondrial inner membrane presequence translocase complex(GO:0005744) |
0.1 | 2.5 | GO:0031970 | mitochondrial intermembrane space(GO:0005758) organelle envelope lumen(GO:0031970) |
0.0 | 2.5 | GO:0048475 | membrane coat(GO:0030117) coated membrane(GO:0048475) |
0.1 | 2.1 | GO:0031105 | septin ring(GO:0005940) septin complex(GO:0031105) septin cytoskeleton(GO:0032156) |
0.5 | 1.9 | GO:0097134 | cyclin E1-CDK2 complex(GO:0097134) |
0.2 | 1.9 | GO:0005892 | acetylcholine-gated channel complex(GO:0005892) |
0.2 | 1.6 | GO:0031261 | DNA replication preinitiation complex(GO:0031261) |
0.0 | 1.6 | GO:0055037 | recycling endosome(GO:0055037) |
0.0 | 1.6 | GO:0042383 | sarcolemma(GO:0042383) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.7 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
0.0 | 2.8 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
0.3 | 2.5 | GO:0016634 | oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor(GO:0016634) |
0.1 | 2.5 | GO:0003684 | damaged DNA binding(GO:0003684) |
0.0 | 2.5 | GO:0004725 | protein tyrosine phosphatase activity(GO:0004725) |
0.0 | 2.0 | GO:0043022 | ribosome binding(GO:0043022) |
0.1 | 1.9 | GO:0022848 | acetylcholine-gated cation channel activity(GO:0022848) |
0.0 | 1.9 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.0 | 1.8 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.0 | 1.7 | GO:0008201 | heparin binding(GO:0008201) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.9 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.1 | 1.8 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 1.5 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 1.3 | PID ENDOTHELIN PATHWAY | Endothelins |
0.0 | 1.1 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
0.1 | 0.9 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.0 | 0.9 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.0 | 0.8 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.5 | PID HEDGEHOG GLI PATHWAY | Hedgehog signaling events mediated by Gli proteins |
0.0 | 0.5 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.2 | 2.7 | REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND | Genes involved in Processive synthesis on the lagging strand |
0.2 | 2.5 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.2 | 2.2 | REACTOME NEF MEDIATED DOWNREGULATION OF MHC CLASS I COMPLEX CELL SURFACE EXPRESSION | Genes involved in Nef mediated downregulation of MHC class I complex cell surface expression |
0.1 | 2.0 | REACTOME LATENT INFECTION OF HOMO SAPIENS WITH MYCOBACTERIUM TUBERCULOSIS | Genes involved in Latent infection of Homo sapiens with Mycobacterium tuberculosis |
0.2 | 1.9 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.1 | 1.9 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.1 | 1.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.2 | 1.1 | REACTOME INTEGRATION OF PROVIRUS | Genes involved in Integration of provirus |
0.0 | 1.1 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |