PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
pou1f1 | dr11_v1_chr9_-_19161982_19161982 | 0.12 | 6.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22099536 Show fit | 2.86 |
ENSDART00000101923
|
|
|
chr12_-_17712393 Show fit | 2.01 |
ENSDART00000143534
ENSDART00000010144 |
parvalbumin 2 |
|
chr9_-_22213297 Show fit | 1.67 |
ENSDART00000110656
ENSDART00000133149 |
crystallin, gamma M2d20 |
|
chr14_+_46313396 Show fit | 1.05 |
ENSDART00000047525
|
crystallin, beta A1, like 1 |
|
chr21_-_20939488 Show fit | 1.03 |
ENSDART00000039043
|
regulator of G protein signaling 7 binding protein b |
|
chr25_+_31227747 Show fit | 0.86 |
ENSDART00000033872
|
troponin I type 2a (skeletal, fast), tandem duplicate 1 |
|
chr5_-_44829719 Show fit | 0.81 |
ENSDART00000019104
|
fructose-1,6-bisphosphatase 2 |
|
chr2_+_2223837 Show fit | 0.79 |
ENSDART00000101038
ENSDART00000129354 |
transmembrane inner ear |
|
chr9_+_18716485 Show fit | 0.77 |
ENSDART00000135125
|
stress-associated endoplasmic reticulum protein family member 2 |
|
chr4_+_9669717 Show fit | 0.77 |
ENSDART00000004604
|
si:dkey-153k10.9 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.0 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.1 | 0.9 | GO:0051965 | positive regulation of synapse assembly(GO:0051965) |
0.0 | 0.9 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.3 | 0.8 | GO:0005986 | sucrose metabolic process(GO:0005985) sucrose biosynthetic process(GO:0005986) disaccharide biosynthetic process(GO:0046351) |
0.0 | 0.8 | GO:0060088 | auditory receptor cell stereocilium organization(GO:0060088) |
0.2 | 0.7 | GO:1900620 | acetylcholine biosynthetic process(GO:0008292) acetate ester biosynthetic process(GO:1900620) |
0.0 | 0.7 | GO:0030968 | endoplasmic reticulum unfolded protein response(GO:0030968) |
0.0 | 0.6 | GO:0014046 | dopamine secretion(GO:0014046) regulation of dopamine secretion(GO:0014059) |
0.0 | 0.5 | GO:0016127 | cholesterol catabolic process(GO:0006707) sterol catabolic process(GO:0016127) |
0.0 | 0.5 | GO:0036368 | cone photoresponse recovery(GO:0036368) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.9 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 0.6 | GO:0031680 | G-protein beta/gamma-subunit complex(GO:0031680) |
0.1 | 0.4 | GO:0071914 | prominosome(GO:0071914) |
0.0 | 0.4 | GO:0005869 | dynactin complex(GO:0005869) |
0.1 | 0.3 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
0.0 | 0.3 | GO:0031209 | SCAR complex(GO:0031209) |
0.1 | 0.2 | GO:0031673 | H zone(GO:0031673) |
0.0 | 0.2 | GO:0043194 | axon initial segment(GO:0043194) |
0.0 | 0.2 | GO:0016012 | sarcoglycan complex(GO:0016012) |
0.0 | 0.2 | GO:0044545 | NSL complex(GO:0044545) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.7 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.3 | 0.8 | GO:0042132 | fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132) |
0.1 | 0.7 | GO:0016413 | O-acetyltransferase activity(GO:0016413) |
0.0 | 0.6 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
0.0 | 0.6 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.1 | 0.5 | GO:0033781 | cholesterol 24-hydroxylase activity(GO:0033781) |
0.0 | 0.5 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
0.1 | 0.4 | GO:0004466 | long-chain-acyl-CoA dehydrogenase activity(GO:0004466) |
0.1 | 0.4 | GO:0003868 | 4-hydroxyphenylpyruvate dioxygenase activity(GO:0003868) |
0.1 | 0.4 | GO:0055105 | ubiquitin-protein transferase inhibitor activity(GO:0055105) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.5 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
0.0 | 0.2 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.0 | 0.2 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.0 | 0.7 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
0.0 | 0.4 | REACTOME MITOCHONDRIAL FATTY ACID BETA OXIDATION | Genes involved in Mitochondrial Fatty Acid Beta-Oxidation |
0.0 | 0.3 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.0 | 0.3 | REACTOME ADVANCED GLYCOSYLATION ENDPRODUCT RECEPTOR SIGNALING | Genes involved in Advanced glycosylation endproduct receptor signaling |
0.0 | 0.3 | REACTOME ALPHA LINOLENIC ACID ALA METABOLISM | Genes involved in alpha-linolenic acid (ALA) metabolism |
0.0 | 0.3 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
0.0 | 0.3 | REACTOME CRMPS IN SEMA3A SIGNALING | Genes involved in CRMPs in Sema3A signaling |
0.0 | 0.2 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
0.0 | 0.2 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |