PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
pou2f1b | dr11_v1_chr9_+_34350025_34350025 | 0.18 | 4.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_-_77506362 Show fit | 0.71 |
ENSDART00000174387
ENSDART00000181181 |
|
|
chr20_+_34374735 Show fit | 0.70 |
ENSDART00000144090
|
si:dkeyp-11g8.3 |
|
chr5_+_35458190 Show fit | 0.69 |
ENSDART00000051313
|
fructose-1,6-bisphosphatase 1b |
|
chr23_+_22200467 Show fit | 0.64 |
ENSDART00000025414
|
solute carrier family 2 (facilitated glucose transporter), member 1a |
|
chr9_+_48755638 Show fit | 0.63 |
ENSDART00000047401
|
ATP-binding cassette, sub-family B (MDR/TAP), member 11a |
|
chr18_+_26422124 Show fit | 0.61 |
ENSDART00000060245
|
cathepsin H |
|
chr20_+_52492192 Show fit | 0.60 |
ENSDART00000057986
|
zgc:100864 |
|
chr18_+_22287084 Show fit | 0.58 |
ENSDART00000151919
ENSDART00000181644 |
CCCTC-binding factor (zinc finger protein) |
|
chr24_-_23758003 Show fit | 0.57 |
ENSDART00000178085
|
Danio rerio minichromosome maintenance domain containing 2 (mcmdc2), mRNA. |
|
chr16_+_52847079 Show fit | 0.57 |
ENSDART00000163151
|
centrosomal protein 72 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.7 | GO:0005985 | sucrose metabolic process(GO:0005985) sucrose biosynthetic process(GO:0005986) disaccharide biosynthetic process(GO:0046351) |
0.2 | 0.6 | GO:0015722 | canalicular bile acid transport(GO:0015722) bile acid secretion(GO:0032782) |
0.1 | 0.6 | GO:0046323 | glucose import(GO:0046323) |
0.0 | 0.6 | GO:0034629 | cellular protein complex localization(GO:0034629) |
0.0 | 0.6 | GO:2000369 | regulation of clathrin-mediated endocytosis(GO:2000369) |
0.1 | 0.5 | GO:0030224 | monocyte differentiation(GO:0030224) |
0.1 | 0.5 | GO:0044209 | AMP salvage(GO:0044209) |
0.0 | 0.5 | GO:0034724 | DNA replication-independent nucleosome organization(GO:0034724) |
0.1 | 0.4 | GO:0006409 | tRNA export from nucleus(GO:0006409) tRNA-containing ribonucleoprotein complex export from nucleus(GO:0071431) |
0.1 | 0.4 | GO:0009052 | pentose-phosphate shunt, non-oxidative branch(GO:0009052) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.5 | GO:0035101 | FACT complex(GO:0035101) |
0.0 | 0.5 | GO:0005665 | DNA-directed RNA polymerase II, core complex(GO:0005665) |
0.1 | 0.4 | GO:0034456 | CURI complex(GO:0032545) UTP-C complex(GO:0034456) |
0.0 | 0.4 | GO:0005801 | cis-Golgi network(GO:0005801) |
0.0 | 0.4 | GO:0043186 | P granule(GO:0043186) |
0.1 | 0.3 | GO:0097519 | DNA recombinase complex(GO:0097519) |
0.0 | 0.3 | GO:0072669 | tRNA-splicing ligase complex(GO:0072669) |
0.0 | 0.3 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
0.0 | 0.3 | GO:0001917 | photoreceptor inner segment(GO:0001917) |
0.1 | 0.2 | GO:0043614 | multi-eIF complex(GO:0043614) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.7 | GO:0042132 | fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132) |
0.2 | 0.6 | GO:0015126 | canalicular bile acid transmembrane transporter activity(GO:0015126) bile acid-exporting ATPase activity(GO:0015432) |
0.0 | 0.6 | GO:0005355 | glucose transmembrane transporter activity(GO:0005355) monosaccharide transmembrane transporter activity(GO:0015145) hexose transmembrane transporter activity(GO:0015149) |
0.1 | 0.5 | GO:0004001 | adenosine kinase activity(GO:0004001) |
0.0 | 0.5 | GO:0008139 | nuclear localization sequence binding(GO:0008139) |
0.0 | 0.5 | GO:0031491 | nucleosome binding(GO:0031491) |
0.0 | 0.5 | GO:0005109 | frizzled binding(GO:0005109) |
0.1 | 0.4 | GO:0008386 | cholesterol monooxygenase (side-chain-cleaving) activity(GO:0008386) oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713) |
0.1 | 0.4 | GO:0016434 | rRNA (cytosine) methyltransferase activity(GO:0016434) |
0.1 | 0.4 | GO:0034584 | piRNA binding(GO:0034584) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.4 | PID ARF6 PATHWAY | Arf6 signaling events |
0.0 | 0.4 | PID PTP1B PATHWAY | Signaling events mediated by PTP1B |
0.0 | 0.3 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.0 | 0.3 | PID TXA2PATHWAY | Thromboxane A2 receptor signaling |
0.0 | 0.2 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
0.0 | 1.1 | REACTOME ELONGATION ARREST AND RECOVERY | Genes involved in Elongation arrest and recovery |
0.0 | 0.8 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.0 | 0.7 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.0 | 0.4 | REACTOME THE ACTIVATION OF ARYLSULFATASES | Genes involved in The activation of arylsulfatases |
0.0 | 0.4 | REACTOME ACTIVATION OF IRF3 IRF7 MEDIATED BY TBK1 IKK EPSILON | Genes involved in Activation of IRF3/IRF7 mediated by TBK1/IKK epsilon |
0.0 | 0.4 | REACTOME ASSOCIATION OF LICENSING FACTORS WITH THE PRE REPLICATIVE COMPLEX | Genes involved in Association of licensing factors with the pre-replicative complex |
0.0 | 0.3 | REACTOME ENDOGENOUS STEROLS | Genes involved in Endogenous sterols |
0.0 | 0.3 | REACTOME TRAFFICKING OF AMPA RECEPTORS | Genes involved in Trafficking of AMPA receptors |
0.0 | 0.3 | REACTOME PYRIMIDINE METABOLISM | Genes involved in Pyrimidine metabolism |