PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
pou2f2a | dr11_v1_chr16_+_10918252_10918252 | -0.66 | 2.1e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr13_-_6081803 Show fit | 4.78 |
ENSDART00000099224
|
deltaD |
|
chr23_+_21473103 Show fit | 4.67 |
ENSDART00000142921
|
si:ch73-21g5.7 |
|
chr25_+_22320738 Show fit | 3.56 |
ENSDART00000073566
|
cytochrome P450, family 11, subfamily A, polypeptide 1 |
|
chr4_+_15968483 Show fit | 3.33 |
ENSDART00000101575
|
si:dkey-117n7.5 |
|
chr14_-_32965169 Show fit | 3.07 |
ENSDART00000114973
|
caudal type homeobox 4 |
|
chr11_-_11575070 Show fit | 2.62 |
ENSDART00000142208
|
zgc:110712 |
|
chr14_-_26704829 Show fit | 2.38 |
ENSDART00000078563
|
neurogenin 1 |
|
chr5_-_66028371 Show fit | 2.28 |
ENSDART00000183012
|
NOTCH regulated ankyrin repeat protein b |
|
chr7_+_15736230 Show fit | 2.11 |
ENSDART00000109942
|
multiple C2 domains, transmembrane 2b |
|
chr23_+_7692042 Show fit | 2.05 |
ENSDART00000018512
|
protein O-fucosyltransferase 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 5.0 | GO:0021516 | dorsal spinal cord development(GO:0021516) |
0.7 | 4.8 | GO:0021523 | somatic motor neuron differentiation(GO:0021523) |
0.7 | 3.6 | GO:0006700 | C21-steroid hormone biosynthetic process(GO:0006700) |
0.0 | 3.2 | GO:0007098 | centrosome cycle(GO:0007098) |
1.0 | 3.1 | GO:0007440 | foregut morphogenesis(GO:0007440) |
0.6 | 3.0 | GO:0038107 | nodal signaling pathway involved in determination of left/right asymmetry(GO:0038107) regulation of nodal signaling pathway involved in determination of left/right asymmetry(GO:1900145) |
0.2 | 2.7 | GO:0002043 | blood vessel endothelial cell proliferation involved in sprouting angiogenesis(GO:0002043) |
0.0 | 2.3 | GO:0046928 | regulation of neurotransmitter secretion(GO:0046928) |
0.7 | 2.0 | GO:0090008 | hypoblast development(GO:0090008) |
0.3 | 2.0 | GO:0006004 | fucose metabolic process(GO:0006004) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.1 | GO:0048471 | perinuclear region of cytoplasm(GO:0048471) |
0.7 | 2.9 | GO:0005880 | nuclear microtubule(GO:0005880) |
0.0 | 2.3 | GO:0016342 | catenin complex(GO:0016342) |
0.1 | 2.0 | GO:0030867 | rough endoplasmic reticulum membrane(GO:0030867) |
0.0 | 1.8 | GO:0000775 | chromosome, centromeric region(GO:0000775) |
0.4 | 1.6 | GO:0061673 | mitotic spindle astral microtubule(GO:0061673) |
0.4 | 1.6 | GO:0032299 | ribonuclease H2 complex(GO:0032299) |
0.3 | 1.5 | GO:0043625 | delta DNA polymerase complex(GO:0043625) |
0.0 | 1.5 | GO:0030125 | clathrin vesicle coat(GO:0030125) |
0.1 | 1.4 | GO:0036449 | microtubule minus-end(GO:0036449) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 35.7 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
0.0 | 6.9 | GO:0003682 | chromatin binding(GO:0003682) |
0.2 | 5.3 | GO:0005112 | Notch binding(GO:0005112) |
0.0 | 4.2 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.0 | 4.0 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
1.2 | 3.6 | GO:0008386 | cholesterol monooxygenase (side-chain-cleaving) activity(GO:0008386) oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen(GO:0016713) |
0.0 | 2.8 | GO:0008017 | microtubule binding(GO:0008017) |
0.0 | 2.6 | GO:0042802 | identical protein binding(GO:0042802) |
0.3 | 2.4 | GO:0070888 | E-box binding(GO:0070888) |
0.0 | 2.1 | GO:0003777 | microtubule motor activity(GO:0003777) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.8 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.1 | 4.8 | ST JNK MAPK PATHWAY | JNK MAPK Pathway |
0.1 | 2.6 | PID NOTCH PATHWAY | Notch signaling pathway |
0.1 | 1.8 | PID GLYPICAN 1PATHWAY | Glypican 1 network |
0.0 | 1.7 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.0 | 1.6 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 1.5 | PID AVB3 INTEGRIN PATHWAY | Integrins in angiogenesis |
0.0 | 1.3 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 1.2 | ST GA12 PATHWAY | G alpha 12 Pathway |
0.1 | 1.1 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 4.8 | REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX | Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex |
0.4 | 3.6 | REACTOME ENDOGENOUS STEROLS | Genes involved in Endogenous sterols |
0.1 | 2.6 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.1 | 2.4 | REACTOME KINESINS | Genes involved in Kinesins |
0.2 | 2.0 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |
0.1 | 2.0 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.0 | 2.0 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
0.1 | 1.5 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
0.0 | 1.4 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.0 | 1.3 | REACTOME ANTIGEN ACTIVATES B CELL RECEPTOR LEADING TO GENERATION OF SECOND MESSENGERS | Genes involved in Antigen Activates B Cell Receptor Leading to Generation of Second Messengers |