PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
pou2f3 | dr11_v1_chr5_+_58550795_58550795 | 0.44 | 6.0e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_-_14052349 Show fit | 3.99 |
ENSDART00000135811
|
ATPase plasma membrane Ca2+ transporting 3a |
|
chr17_-_37395460 Show fit | 3.10 |
ENSDART00000148160
ENSDART00000075975 |
cysteine-rich protein 1 |
|
chr16_+_26012569 Show fit | 3.05 |
ENSDART00000148846
|
protease, serine, 59, tandem duplicate 1 |
|
chr25_+_35189555 Show fit | 3.03 |
ENSDART00000044453
|
anoctamin 5a |
|
chr25_+_31277415 Show fit | 2.94 |
ENSDART00000036275
|
troponin I type 2a (skeletal, fast), tandem duplicate 4 |
|
chr9_+_49659114 Show fit | 2.90 |
ENSDART00000189643
|
cysteine and serine rich nuclear protein 3 |
|
chr14_+_15155684 Show fit | 2.88 |
ENSDART00000167966
|
zgc:158852 |
|
chr5_-_6567464 Show fit | 2.82 |
ENSDART00000184985
|
tankyrase 1 binding protein 1 |
|
chr14_-_46238186 Show fit | 2.80 |
ENSDART00000173245
|
si:ch211-113d11.6 |
|
chr16_+_2820340 Show fit | 2.71 |
ENSDART00000092299
ENSDART00000192931 ENSDART00000148512 |
si:dkey-288i20.2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.4 | GO:0060048 | cardiac muscle contraction(GO:0060048) |
0.0 | 5.2 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.0 | 5.0 | GO:0006836 | neurotransmitter transport(GO:0006836) |
0.0 | 4.1 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
1.0 | 3.1 | GO:0097237 | cellular response to antibiotic(GO:0071236) cellular response to toxic substance(GO:0097237) |
0.0 | 3.0 | GO:1902476 | chloride transmembrane transport(GO:1902476) |
0.3 | 2.9 | GO:0051965 | positive regulation of synapse assembly(GO:0051965) |
0.2 | 2.5 | GO:0039023 | pronephric duct morphogenesis(GO:0039023) |
0.1 | 2.3 | GO:0032012 | ARF protein signal transduction(GO:0032011) regulation of ARF protein signal transduction(GO:0032012) |
0.5 | 2.0 | GO:0046166 | methylglyoxal biosynthetic process(GO:0019242) glyceraldehyde-3-phosphate biosynthetic process(GO:0046166) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 7.4 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 7.4 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.1 | 6.0 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 5.0 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.0 | 3.2 | GO:0030424 | axon(GO:0030424) |
0.1 | 3.0 | GO:0016605 | PML body(GO:0016605) |
0.0 | 2.5 | GO:0031201 | SNARE complex(GO:0031201) |
0.0 | 2.1 | GO:0005769 | early endosome(GO:0005769) |
0.0 | 2.0 | GO:0016459 | myosin complex(GO:0016459) |
0.1 | 1.8 | GO:0005885 | Arp2/3 protein complex(GO:0005885) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.9 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 4.8 | GO:0004879 | RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding(GO:0004879) |
0.2 | 4.5 | GO:0030165 | PDZ domain binding(GO:0030165) |
0.1 | 3.3 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.0 | 3.2 | GO:0005254 | chloride channel activity(GO:0005254) |
0.0 | 3.1 | GO:0005179 | hormone activity(GO:0005179) |
0.8 | 3.0 | GO:0005521 | lamin binding(GO:0005521) |
0.0 | 2.6 | GO:0042277 | peptide binding(GO:0042277) |
0.0 | 2.6 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 2.5 | GO:0005484 | SNAP receptor activity(GO:0005484) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.1 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.1 | 1.6 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.1 | 1.4 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.1 | 1.2 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
0.1 | 1.1 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
0.0 | 1.1 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
0.0 | 0.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.0 | 0.7 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.0 | 0.7 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 0.5 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.6 | REACTOME BOTULINUM NEUROTOXICITY | Genes involved in Botulinum neurotoxicity |
0.2 | 2.8 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
0.1 | 1.9 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.2 | 1.6 | REACTOME ALPHA LINOLENIC ACID ALA METABOLISM | Genes involved in alpha-linolenic acid (ALA) metabolism |
0.1 | 1.6 | REACTOME SYNTHESIS SECRETION AND DEACYLATION OF GHRELIN | Genes involved in Synthesis, Secretion, and Deacylation of Ghrelin |
0.1 | 1.5 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.1 | 1.5 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.1 | 1.3 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |
0.3 | 1.2 | REACTOME CYTOSOLIC SULFONATION OF SMALL MOLECULES | Genes involved in Cytosolic sulfonation of small molecules |
0.1 | 1.2 | REACTOME REGULATION OF INSULIN LIKE GROWTH FACTOR IGF ACTIVITY BY INSULIN LIKE GROWTH FACTOR BINDING PROTEINS IGFBPS | Genes involved in Regulation of Insulin-like Growth Factor (IGF) Activity by Insulin-like Growth Factor Binding Proteins (IGFBPs) |