PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
pou3f1 | dr11_v1_chr16_+_33593116_33593116 | -0.39 | 1.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr21_+_30563115 Show fit | 3.13 |
ENSDART00000028566
|
si:ch211-200p22.4 |
|
chr13_-_7031033 Show fit | 2.84 |
ENSDART00000193211
|
|
|
chr16_-_12173554 Show fit | 2.84 |
ENSDART00000110567
ENSDART00000155935 |
calsyntenin 3 |
|
chr15_+_45640906 Show fit | 2.73 |
ENSDART00000149361
ENSDART00000149079 |
S-antigen; retina and pineal gland (arrestin) b |
|
chr18_-_42830563 Show fit | 2.57 |
ENSDART00000191488
|
tetratricopeptide repeat domain 36 |
|
chr6_+_41096058 Show fit | 2.52 |
ENSDART00000028373
|
FK506 binding protein 5 |
|
chr16_-_43971258 Show fit | 2.37 |
ENSDART00000141941
|
zinc finger protein, FOG family member 2a |
|
chr14_+_32839535 Show fit | 2.15 |
ENSDART00000168975
|
arrestin 3b, retinal (X-arrestin) |
|
chr9_-_9980704 Show fit | 2.06 |
ENSDART00000130243
ENSDART00000193475 |
UDP glucuronosyltransferase 1 family a, b |
|
chr7_-_24699985 Show fit | 2.01 |
ENSDART00000052802
|
calbindin 2b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 4.5 | GO:0051965 | positive regulation of synapse assembly(GO:0051965) |
0.3 | 4.1 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.1 | 3.0 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
0.1 | 2.9 | GO:0016185 | synaptic vesicle budding from presynaptic endocytic zone membrane(GO:0016185) |
0.0 | 2.8 | GO:0051260 | protein homooligomerization(GO:0051260) |
0.1 | 2.5 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
0.5 | 2.0 | GO:0099509 | regulation of presynaptic cytosolic calcium ion concentration(GO:0099509) regulation of long-term synaptic potentiation(GO:1900271) |
0.2 | 1.9 | GO:1902041 | regulation of extrinsic apoptotic signaling pathway via death domain receptors(GO:1902041) negative regulation of extrinsic apoptotic signaling pathway via death domain receptors(GO:1902042) |
0.0 | 1.9 | GO:1902476 | chloride transmembrane transport(GO:1902476) |
0.6 | 1.8 | GO:0097688 | AMPA glutamate receptor clustering(GO:0097113) glutamate receptor clustering(GO:0097688) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.3 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.2 | 3.8 | GO:0043195 | terminal bouton(GO:0043195) |
0.3 | 3.1 | GO:0098894 | presynaptic endocytic zone(GO:0098833) presynaptic endocytic zone membrane(GO:0098835) extrinsic component of presynaptic membrane(GO:0098888) extrinsic component of presynaptic endocytic zone(GO:0098894) |
0.1 | 2.7 | GO:0001917 | photoreceptor inner segment(GO:0001917) |
0.0 | 2.3 | GO:0042383 | sarcolemma(GO:0042383) |
0.1 | 1.9 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.1 | 1.8 | GO:0031594 | neuromuscular junction(GO:0031594) |
0.0 | 1.7 | GO:0005637 | nuclear inner membrane(GO:0005637) |
0.0 | 1.5 | GO:0032580 | Golgi cisterna membrane(GO:0032580) |
0.0 | 1.4 | GO:0043025 | neuronal cell body(GO:0043025) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.1 | GO:0005545 | 1-phosphatidylinositol binding(GO:0005545) |
0.0 | 3.1 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
0.0 | 2.7 | GO:0005179 | hormone activity(GO:0005179) |
0.6 | 2.5 | GO:0005527 | macrolide binding(GO:0005527) FK506 binding(GO:0005528) |
0.1 | 2.4 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.0 | 2.4 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.2 | 2.3 | GO:0005432 | calcium:sodium antiporter activity(GO:0005432) |
0.0 | 2.3 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.0 | 2.2 | GO:0001085 | RNA polymerase II transcription factor binding(GO:0001085) |
0.0 | 2.1 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.0 | 0.9 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 0.8 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.0 | 0.6 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.0 | 0.5 | PID RETINOIC ACID PATHWAY | Retinoic acid receptors-mediated signaling |
0.0 | 0.5 | PID IL27 PATHWAY | IL27-mediated signaling events |
0.0 | 0.5 | PID PI3KCI AKT PATHWAY | Class I PI3K signaling events mediated by Akt |
0.0 | 0.4 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
0.0 | 0.3 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.7 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.0 | 1.4 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |
0.0 | 1.2 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.1 | 1.1 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
0.1 | 1.1 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.0 | 1.0 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.1 | 0.7 | REACTOME OPSINS | Genes involved in Opsins |
0.0 | 0.7 | REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE | Genes involved in Cytochrome P450 - arranged by substrate type |
0.0 | 0.6 | REACTOME KINESINS | Genes involved in Kinesins |
0.0 | 0.6 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |