PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
pou4f2 | dr11_v1_chr1_+_36437585_36437585 | 0.72 | 4.8e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_31079186 Show fit | 4.15 |
ENSDART00000145636
ENSDART00000140569 |
elongin B elongin B |
|
chr21_+_25226558 Show fit | 4.11 |
ENSDART00000168480
|
syncollin, tandem duplicate 2 |
|
chr17_-_37395460 Show fit | 3.75 |
ENSDART00000148160
ENSDART00000075975 |
cysteine-rich protein 1 |
|
chr8_-_40555340 Show fit | 3.62 |
ENSDART00000163348
|
NPC1 like intracellular cholesterol transporter 1 |
|
chr10_-_17159761 Show fit | 3.45 |
ENSDART00000080449
|
solute carrier family 5 (sodium/glucose cotransporter), member 1 |
|
chr8_-_4327473 Show fit | 3.22 |
ENSDART00000134378
|
cut-like homeobox 2b |
|
chr4_-_1360495 Show fit | 3.02 |
ENSDART00000164623
|
pleiotrophin |
|
chr12_-_35787801 Show fit | 2.87 |
ENSDART00000171682
|
apoptosis-associated tyrosine kinase b |
|
chr1_-_22512063 Show fit | 2.84 |
ENSDART00000031546
ENSDART00000190987 |
cholinergic receptor, nicotinic, alpha 6 |
|
chr5_-_38155005 Show fit | 2.69 |
ENSDART00000097770
|
guanylate cyclase 2D, retinal |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 4.7 | GO:0051965 | positive regulation of synapse assembly(GO:0051965) |
0.0 | 4.5 | GO:0006887 | exocytosis(GO:0006887) |
0.1 | 4.1 | GO:0006368 | transcription elongation from RNA polymerase II promoter(GO:0006368) |
1.3 | 3.8 | GO:0071236 | cellular response to antibiotic(GO:0071236) cellular response to toxic substance(GO:0097237) |
0.0 | 3.0 | GO:0051781 | positive regulation of cell division(GO:0051781) |
0.5 | 2.9 | GO:0038083 | peptidyl-tyrosine autophosphorylation(GO:0038083) |
0.1 | 2.9 | GO:0070593 | dendrite self-avoidance(GO:0070593) |
0.0 | 2.8 | GO:0006814 | sodium ion transport(GO:0006814) |
0.1 | 2.7 | GO:0007168 | receptor guanylyl cyclase signaling pathway(GO:0007168) |
0.1 | 2.7 | GO:0035335 | peptidyl-tyrosine dephosphorylation(GO:0035335) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.4 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.7 | 4.1 | GO:0030891 | VCB complex(GO:0030891) |
0.2 | 4.1 | GO:0030667 | secretory granule membrane(GO:0030667) |
0.1 | 3.3 | GO:0043204 | perikaryon(GO:0043204) |
0.0 | 3.0 | GO:0005871 | kinesin complex(GO:0005871) |
0.0 | 2.5 | GO:0005581 | collagen trimer(GO:0005581) |
0.8 | 2.4 | GO:0044316 | cone cell pedicle(GO:0044316) |
0.0 | 2.1 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 1.6 | GO:0005930 | axoneme(GO:0005930) |
0.2 | 1.5 | GO:0005955 | calcineurin complex(GO:0005955) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.8 | GO:0042277 | peptide binding(GO:0042277) |
0.7 | 3.4 | GO:0005412 | glucose:sodium symporter activity(GO:0005412) |
0.2 | 3.3 | GO:0004383 | guanylate cyclase activity(GO:0004383) |
0.0 | 3.0 | GO:0008201 | heparin binding(GO:0008201) |
0.1 | 2.9 | GO:0098632 | protein binding involved in cell-cell adhesion(GO:0098632) |
0.2 | 2.7 | GO:0036312 | phosphatidylinositol 3-kinase regulatory subunit binding(GO:0036312) |
0.1 | 2.5 | GO:0004180 | carboxypeptidase activity(GO:0004180) |
0.0 | 2.5 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.1 | 2.4 | GO:0022848 | acetylcholine-gated cation channel activity(GO:0022848) |
0.0 | 2.4 | GO:0015293 | symporter activity(GO:0015293) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.0 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.2 | 2.7 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.1 | 2.5 | NABA COLLAGENS | Genes encoding collagen proteins |
0.1 | 1.5 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
0.0 | 1.2 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 0.8 | PID TCR RAS PATHWAY | Ras signaling in the CD4+ TCR pathway |
0.0 | 0.6 | ST G ALPHA I PATHWAY | G alpha i Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.4 | REACTOME TRANSPORT OF GLUCOSE AND OTHER SUGARS BILE SALTS AND ORGANIC ACIDS METAL IONS AND AMINE COMPOUNDS | Genes involved in Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds |
0.1 | 2.5 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.3 | 2.4 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.1 | 2.1 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.1 | 1.5 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.1 | 1.3 | REACTOME PLATELET SENSITIZATION BY LDL | Genes involved in Platelet sensitization by LDL |
0.1 | 1.2 | REACTOME HS GAG BIOSYNTHESIS | Genes involved in HS-GAG biosynthesis |
0.1 | 1.1 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.0 | 1.1 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.1 | 1.0 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |