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PRJEB1986: zebrafish developmental stages transcriptome

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Results for pou6f1

Z-value: 0.53

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Transcription factors associated with pou6f1

Gene Symbol Gene ID Gene Info
pou6f1
ENSDARG00000011570 POU class 6 homeobox 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
pou6f1dr11_v1_chr23_-_33702900_33702900-0.607.0e-03Click!

Activity profile of pou6f1 motif

Sorted Z-values of pou6f1 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr9_-_22339582 3.26 ENSDART00000134805
crygm2d1
crystallin, gamma M2d1
chr16_+_26017360 2.05 ENSDART00000149466
prss59.2
protease, serine, 59, tandem duplicate 2
chr16_+_26012569 1.90 ENSDART00000148846
prss59.1
protease, serine, 59, tandem duplicate 1
chr14_+_50770537 1.31 ENSDART00000158723
sncb
synuclein, beta
chr15_-_16098531 1.18 ENSDART00000080377
aldoca
aldolase C, fructose-bisphosphate, a
chr4_+_22365061 1.00 ENSDART00000039277
lhfpl3
LHFPL tetraspan subfamily member 3
chr3_-_28250722 0.99 ENSDART00000165936
rbfox1
RNA binding fox-1 homolog 1
chr6_+_60055168 0.85 ENSDART00000008752
pck1
phosphoenolpyruvate carboxykinase 1 (soluble)
chr12_+_20352400 0.80 ENSDART00000066383
hbae5
hemoglobin, alpha embryonic 5
chr22_-_15385442 0.79 ENSDART00000090975
tmem264
transmembrane protein 264
chr16_-_11798994 0.77 ENSDART00000135408
cnfn
cornifelin
chr11_+_39672874 0.76 ENSDART00000046663
ENSDART00000157659
camta1b
calmodulin binding transcription activator 1b
chr3_+_33341640 0.74 ENSDART00000186352
pyya
peptide YYa
chr24_-_32408404 0.74 ENSDART00000144157
si:ch211-56a11.2
si:ch211-56a11.2
chr4_-_72609735 0.72 ENSDART00000174299
ENSDART00000159227
si:cabz01054394.6
si:cabz01054394.6
chr2_+_9552456 0.71 ENSDART00000056896
dnajb4
DnaJ (Hsp40) homolog, subfamily B, member 4
chr1_+_50968908 0.67 ENSDART00000150353
ENSDART00000012842
mdh1aa
malate dehydrogenase 1Aa, NAD (soluble)
chr21_+_25231160 0.65 ENSDART00000063089
ENSDART00000139127
gng8
guanine nucleotide binding protein (G protein), gamma 8
chr19_-_5103313 0.63 ENSDART00000037007
tpi1a
triosephosphate isomerase 1a
chr20_+_15982482 0.61 ENSDART00000020999
angptl1a
angiopoietin-like 1a
chr4_+_14826299 0.57 ENSDART00000067035
shisal1a
shisa like 1a
chr16_-_5154024 0.57 ENSDART00000132069
ENSDART00000060635
dctn3
dynactin 3 (p22)
chr8_+_37168570 0.54 ENSDART00000098636
csf1b
colony stimulating factor 1b (macrophage)
chr4_+_12612723 0.51 ENSDART00000133767
lmo3
LIM domain only 3
chr18_-_1185772 0.50 ENSDART00000143245
nptnb
neuroplastin b
chr1_+_45121393 0.50 ENSDART00000142702
muc13a
mucin 13a, cell surface associated
chr17_+_12698532 0.48 ENSDART00000064509
ENSDART00000136830
stmn4l
stathmin-like 4, like
chr16_-_2414063 0.48 ENSDART00000073621
zgc:152945
zgc:152945
chr12_-_28983584 0.48 ENSDART00000112374
zgc:171713
zgc:171713
chr7_+_38717624 0.47 ENSDART00000132522
syt13
synaptotagmin XIII
chr9_-_44953349 0.47 ENSDART00000135156
vil1
villin 1
chr9_-_44953664 0.46 ENSDART00000188558
ENSDART00000185210
vil1
villin 1
chr19_+_19600297 0.45 ENSDART00000160134
ENSDART00000183493
hibadha
3-hydroxyisobutyrate dehydrogenase a
chr12_+_18681477 0.43 ENSDART00000127981
ENSDART00000143979
rgs9b
regulator of G protein signaling 9b
chr24_-_21404367 0.43 ENSDART00000152093
atp8a2
ATPase phospholipid transporting 8A2
chr22_+_34710473 0.43 ENSDART00000155906
hoga1
4-hydroxy-2-oxoglutarate aldolase 1
chr21_-_26918901 0.42 ENSDART00000100685
lrfn4a
leucine rich repeat and fibronectin type III domain containing 4a
chr9_+_11034314 0.41 ENSDART00000032695
asic4a
acid-sensing (proton-gated) ion channel family member 4a
chr5_+_64732270 0.41 ENSDART00000134241
olfm1a
olfactomedin 1a
chr19_+_42469058 0.41 ENSDART00000076915
si:dkey-166k12.1
si:dkey-166k12.1
chr4_+_12615836 0.37 ENSDART00000003583
lmo3
LIM domain only 3
chr9_-_32672129 0.34 ENSDART00000140581
gzm3.4
granzyme 3, tandem duplicate 4
chr9_-_6624663 0.34 ENSDART00000092537
GPR45
si:dkeyp-118h3.5
chr1_+_25801648 0.33 ENSDART00000129471
gucy1b1
guanylate cyclase 1 soluble subunit beta 1
chr3_+_52753416 0.31 ENSDART00000171185
gmip
GEM interacting protein
chr25_+_6186823 0.30 ENSDART00000153526
oaz2a
ornithine decarboxylase antizyme 2a
chr25_+_11002640 0.29 ENSDART00000156646
ENSDART00000073383
mhc1lga
major histocompatibility complex class I LGA
chr2_-_21349425 0.28 ENSDART00000171699
hhatla
hedgehog acyltransferase like, a
chr19_+_30662529 0.25 ENSDART00000175662
fam49al
family with sequence similarity 49, member A-like
chr25_-_28600433 0.25 ENSDART00000138980
agbl2
ATP/GTP binding protein-like 2
chr4_+_359970 0.25 ENSDART00000139832
tmem181
transmembrane protein 181
chr24_+_41931585 0.24 ENSDART00000130310
epb41l3a
erythrocyte membrane protein band 4.1-like 3a
chr7_-_19364813 0.24 ENSDART00000173977
ntn4
netrin 4
chr19_-_8600383 0.23 ENSDART00000081546
trim46b
tripartite motif containing 46b
chr13_+_25434932 0.23 ENSDART00000128562
si:dkey-51a16.9
si:dkey-51a16.9
chr4_-_18202291 0.23 ENSDART00000169704
anks1b
ankyrin repeat and sterile alpha motif domain containing 1B
chr9_+_41612642 0.22 ENSDART00000138473
spegb
SPEG complex locus b
chr19_+_46222918 0.22 ENSDART00000158703
vps28
vacuolar protein sorting 28 (yeast)
chr11_-_7320211 0.22 ENSDART00000091664
apc2
adenomatosis polyposis coli 2
chr1_+_19649545 0.21 ENSDART00000054575
tmem192
transmembrane protein 192
chr2_-_21625493 0.21 ENSDART00000137169
zgc:55781
zgc:55781
chr19_+_46222428 0.20 ENSDART00000183984
vps28
vacuolar protein sorting 28 (yeast)
chr13_-_21701323 0.20 ENSDART00000164112
si:dkey-191g9.7
si:dkey-191g9.7
chr16_-_24044664 0.19 ENSDART00000136982
bcam
basal cell adhesion molecule (Lutheran blood group)
chr2_-_57991041 0.18 ENSDART00000111512
si:dkeyp-68b7.12
si:dkeyp-68b7.12
chr2_+_29249204 0.18 ENSDART00000168957
cdh18a
cadherin 18, type 2a
chr2_-_57941037 0.18 ENSDART00000131420
si:dkeyp-68b7.5
si:dkeyp-68b7.5
chr22_+_34710036 0.16 ENSDART00000025820
hoga1
4-hydroxy-2-oxoglutarate aldolase 1
chr20_-_10288156 0.16 ENSDART00000064110
si:dkey-63b1.1
si:dkey-63b1.1
chr17_-_2817035 0.14 ENSDART00000152002
gpr65
G protein-coupled receptor 65
chr2_+_29249561 0.14 ENSDART00000099157
cdh18a
cadherin 18, type 2a
chr22_+_1462997 0.14 ENSDART00000157476
si:dkeyp-53d3.5
si:dkeyp-53d3.5
chr13_-_42560662 0.14 ENSDART00000124898
CR792417.1

chr5_-_35953472 0.14 ENSDART00000143448
rxfp2l
relaxin/insulin-like family peptide receptor 2, like
chr2_-_20981907 0.13 ENSDART00000113384
lyrm4
LYR motif containing 4
chr25_+_37480285 0.13 ENSDART00000166187
CABZ01095001.1

chr15_-_33172246 0.13 ENSDART00000158666
nbeab
neurobeachin b
chr4_-_76370630 0.13 ENSDART00000168831
ENSDART00000174313
si:ch73-158p21.3
si:ch73-158p21.3
chr2_-_50372467 0.13 ENSDART00000108900
cntnap2b
contactin associated protein like 2b
chr19_-_9503473 0.13 ENSDART00000091615
iffo1a
intermediate filament family orphan 1a
chr14_+_46003973 0.12 ENSDART00000145241
ENSDART00000141545
slu7
SLU7 homolog, splicing factor
chr21_+_40292801 0.12 ENSDART00000174220
si:ch211-218m3.16
si:ch211-218m3.16
chr3_+_17689419 0.12 ENSDART00000192842
ENSDART00000126029
dhx58
DEXH (Asp-Glu-X-His) box polypeptide 58
chr12_+_32729470 0.12 ENSDART00000175712
rbfox3a
RNA binding fox-1 homolog 3a
chr1_+_40308077 0.12 ENSDART00000138992
vwa10.2
von Willebrand factor A domain containing 10, tandem duplicate 2
chr16_-_21038015 0.12 ENSDART00000059239
snx10b
sorting nexin 10b
chr22_-_11520405 0.11 ENSDART00000063157
slc26a11
solute carrier family 26 (anion exchanger), member 11
chr4_-_72609118 0.11 ENSDART00000174077
si:cabz01054396.2
si:cabz01054396.2
chr16_-_25368048 0.10 ENSDART00000132445
rbfa
ribosome binding factor A
chr18_+_50523870 0.10 ENSDART00000151593
ubl7b
ubiquitin-like 7b (bone marrow stromal cell-derived)
chr11_+_33628104 0.10 ENSDART00000165318
thsd7bb
thrombospondin, type I, domain containing 7Bb
chr4_-_19028861 0.10 ENSDART00000166374
si:dkey-31f5.11
si:dkey-31f5.11
chr21_-_20733615 0.09 ENSDART00000145544
si:ch211-22d5.2
si:ch211-22d5.2
chr4_+_47751483 0.09 ENSDART00000160043
si:ch211-196f19.1
si:ch211-196f19.1
chr11_+_29770966 0.09 ENSDART00000088624
ENSDART00000124471
rpgrb
retinitis pigmentosa GTPase regulator b
chr13_-_46200240 0.09 ENSDART00000056984
ftr69
finTRIM family, member 69
chr2_+_38892631 0.08 ENSDART00000134040
si:ch211-119o8.4
si:ch211-119o8.4
chr20_-_51697437 0.08 ENSDART00000145391
si:ch211-14a11.2
si:ch211-14a11.2
chr19_-_5265155 0.07 ENSDART00000145003
prf1.3
perforin 1.3
chr25_-_1333676 0.06 ENSDART00000183182
ENSDART00000188907
cln6b
CLN6, transmembrane ER protein b
chr23_+_45860676 0.06 ENSDART00000012234
syap1
synapse associated protein 1
chr19_-_23799729 0.06 ENSDART00000151913
pimr88
Pim proto-oncogene, serine/threonine kinase, related 88
chr24_-_16979728 0.06 ENSDART00000005331
klhl15
kelch-like family member 15
chr1_+_44767657 0.06 ENSDART00000073717
si:dkey-9i23.4
si:dkey-9i23.4
chr6_-_29105727 0.06 ENSDART00000184355
fam69ab
family with sequence similarity 69, member Ab
chr2_-_27619954 0.06 ENSDART00000144826
tgs1
trimethylguanosine synthase 1
chr7_+_48297842 0.05 ENSDART00000052123
slc25a44b
solute carrier family 25, member 44 b
chr1_-_59139848 0.04 ENSDART00000191863
si:ch1073-110a20.2
si:ch1073-110a20.2
chr2_-_12243213 0.04 ENSDART00000113081
gpr158b
G protein-coupled receptor 158b
chr6_+_23712911 0.03 ENSDART00000167795
zgc:158654
zgc:158654
chr2_-_48966431 0.03 ENSDART00000147948
kcnj9
potassium inwardly-rectifying channel, subfamily J, member 9
chr18_+_33276609 0.03 ENSDART00000137208
v2rx3
vomeronasal 2 receptor, x3
chr13_+_406635 0.03 ENSDART00000181275
CU570800.4

chr10_-_45058886 0.03 ENSDART00000159347
mrps24
mitochondrial ribosomal protein S24
chr11_+_21587950 0.03 ENSDART00000162251
FAM72B
zgc:101564
chr10_+_36345176 0.03 ENSDART00000099397
or105-1
odorant receptor, family C, subfamily 105, member 1
chr2_+_6243144 0.02 ENSDART00000058258
gng5
guanine nucleotide binding protein (G protein), gamma 5
chr24_+_14595680 0.02 ENSDART00000137337
ENSDART00000091784
ENSDART00000136026
thtpa
thiamine triphosphatase
chr15_-_931815 0.02 ENSDART00000106627
ENSDART00000102239
ENSDART00000184754
ENSDART00000186733
zgc:162936
zgc:162936
chr6_-_17849786 0.02 ENSDART00000172709
rptor
regulatory associated protein of MTOR, complex 1
chr21_-_22547496 0.01 ENSDART00000166835
ENSDART00000089030
myo5b
myosin VB
chr1_+_58535306 0.01 ENSDART00000165673
zgc:172091
zgc:172091
chr4_-_75505048 0.00 ENSDART00000163665
si:dkey-71l4.5
si:dkey-71l4.5
chr16_-_48071632 0.00 ENSDART00000148564
CSMD3 (1 of many)
si:ch211-236p22.1

Network of associatons between targets according to the STRING database.

First level regulatory network of pou6f1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0072673 lamellipodium morphogenesis(GO:0072673) regulation of lamellipodium morphogenesis(GO:2000392)
0.2 0.9 GO:0019626 glycerol biosynthetic process(GO:0006114) alditol biosynthetic process(GO:0019401) short-chain fatty acid catabolic process(GO:0019626) response to dexamethasone(GO:0071548)
0.2 0.6 GO:0019242 methylglyoxal biosynthetic process(GO:0019242) glyceraldehyde-3-phosphate biosynthetic process(GO:0046166)
0.1 0.7 GO:0006107 oxaloacetate metabolic process(GO:0006107)
0.1 0.3 GO:0060262 N-terminal protein palmitoylation(GO:0006500) negative regulation of lipoprotein metabolic process(GO:0050748) regulation of N-terminal protein palmitoylation(GO:0060254) negative regulation of N-terminal protein palmitoylation(GO:0060262) negative regulation of protein lipidation(GO:1903060)
0.1 0.3 GO:0099543 trans-synaptic signaling by soluble gas(GO:0099543) trans-synaptic signaling by nitric oxide(GO:0099548)
0.1 0.6 GO:0046487 glyoxylate metabolic process(GO:0046487)
0.1 0.3 GO:0034260 negative regulation of GTPase activity(GO:0034260)
0.1 0.4 GO:0006574 valine catabolic process(GO:0006574)
0.1 0.3 GO:0035610 protein side chain deglutamylation(GO:0035610)
0.1 1.3 GO:0071542 dopaminergic neuron differentiation(GO:0071542)
0.0 1.2 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.0 0.4 GO:0043328 protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway(GO:0043328)
0.0 0.4 GO:1902868 positive regulation of neural retina development(GO:0061075) positive regulation of retina development in camera-type eye(GO:1902868)
0.0 0.8 GO:0015671 oxygen transport(GO:0015671)
0.0 0.6 GO:0045747 positive regulation of Notch signaling pathway(GO:0045747)
0.0 0.2 GO:1904861 excitatory synapse assembly(GO:1904861)
0.0 0.1 GO:0099612 protein localization to juxtaparanode region of axon(GO:0071205) protein localization to axon(GO:0099612)
0.0 0.7 GO:0007631 feeding behavior(GO:0007631)
0.0 3.3 GO:0002088 lens development in camera-type eye(GO:0002088)
0.0 0.7 GO:0051085 chaperone mediated protein folding requiring cofactor(GO:0051085)
0.0 1.0 GO:0021854 limbic system development(GO:0021761) hypothalamus development(GO:0021854)
0.0 0.1 GO:0032608 interferon-beta production(GO:0032608) regulation of interferon-beta production(GO:0032648) positive regulation of interferon-beta production(GO:0032728)
0.0 0.7 GO:0010921 regulation of phosphatase activity(GO:0010921)
0.0 0.2 GO:0031111 negative regulation of microtubule depolymerization(GO:0007026) negative regulation of microtubule polymerization or depolymerization(GO:0031111)
0.0 0.5 GO:0070593 dendrite self-avoidance(GO:0070593)
0.0 0.5 GO:0007019 microtubule depolymerization(GO:0007019)
0.0 0.4 GO:0045332 phospholipid translocation(GO:0045332)
0.0 0.3 GO:0006595 polyamine metabolic process(GO:0006595)
0.0 0.1 GO:0030819 activation of adenylate cyclase activity(GO:0007190) positive regulation of cAMP metabolic process(GO:0030816) positive regulation of cAMP biosynthetic process(GO:0030819) positive regulation of adenylate cyclase activity(GO:0045762)
0.0 0.5 GO:0014059 dopamine secretion(GO:0014046) regulation of dopamine secretion(GO:0014059)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0032433 filopodium tip(GO:0032433)
0.1 0.8 GO:0031838 haptoglobin-hemoglobin complex(GO:0031838)
0.0 0.7 GO:0031680 G-protein beta/gamma-subunit complex(GO:0031680)
0.0 0.6 GO:0005869 dynactin complex(GO:0005869)
0.0 1.3 GO:0043679 axon terminus(GO:0043679)
0.0 0.2 GO:0030877 beta-catenin destruction complex(GO:0030877)
0.0 0.4 GO:0000813 ESCRT I complex(GO:0000813)
0.0 0.1 GO:0033010 paranodal junction(GO:0033010)
0.0 0.2 GO:0005605 basal lamina(GO:0005605) laminin complex(GO:0043256)
0.0 0.2 GO:0031430 M band(GO:0031430)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.3 GO:1903136 cuprous ion binding(GO:1903136)
0.2 0.6 GO:0004807 triose-phosphate isomerase activity(GO:0004807) methylglyoxal synthase activity(GO:0008929)
0.1 0.7 GO:0031843 neuropeptide Y receptor binding(GO:0031841) type 2 neuropeptide Y receptor binding(GO:0031843)
0.1 1.2 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.1 0.7 GO:0030060 L-malate dehydrogenase activity(GO:0030060)
0.1 0.4 GO:0008442 3-hydroxyisobutyrate dehydrogenase activity(GO:0008442)
0.1 0.7 GO:0004865 protein serine/threonine phosphatase inhibitor activity(GO:0004865)
0.1 0.3 GO:0008073 ornithine decarboxylase inhibitor activity(GO:0008073)
0.1 0.8 GO:0031720 haptoglobin binding(GO:0031720)
0.1 0.6 GO:0016832 aldehyde-lyase activity(GO:0016832) oxo-acid-lyase activity(GO:0016833)
0.0 3.3 GO:0005212 structural constituent of eye lens(GO:0005212)
0.0 0.4 GO:0015280 ligand-gated sodium channel activity(GO:0015280)
0.0 0.7 GO:0031681 G-protein beta-subunit binding(GO:0031681)
0.0 0.9 GO:0030145 manganese ion binding(GO:0030145)
0.0 0.3 GO:0004383 guanylate cyclase activity(GO:0004383)
0.0 0.9 GO:0005546 phosphatidylinositol-4,5-bisphosphate binding(GO:0005546)
0.0 0.7 GO:0051087 chaperone binding(GO:0051087)
0.0 3.9 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 0.5 GO:0098632 protein binding involved in cell-cell adhesion(GO:0098632)
0.0 0.1 GO:0030628 pre-mRNA 3'-splice site binding(GO:0030628)
0.0 0.5 GO:0001786 phosphatidylserine binding(GO:0001786)
0.0 0.2 GO:0046875 ephrin receptor binding(GO:0046875)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.9 PID HNF3B PATHWAY FOXA2 and FOXA3 transcription factor networks

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.9 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.0 0.7 REACTOME THROMBOXANE SIGNALLING THROUGH TP RECEPTOR Genes involved in Thromboxane signalling through TP receptor
0.0 0.4 REACTOME MEMBRANE BINDING AND TARGETTING OF GAG PROTEINS Genes involved in Membrane binding and targetting of GAG proteins
0.0 0.6 REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES Genes involved in Loss of Nlp from mitotic centrosomes