PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
pou6f2 | dr11_v1_chr24_+_10202718_10202718 | 0.71 | 6.2e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_+_26012569 Show fit | 4.71 |
ENSDART00000148846
|
protease, serine, 59, tandem duplicate 1 |
|
chr9_-_44953349 Show fit | 3.33 |
ENSDART00000135156
|
villin 1 |
|
chr2_+_39021282 Show fit | 3.08 |
ENSDART00000056577
|
si:ch211-119o8.7 |
|
chr8_-_23780334 Show fit | 2.78 |
ENSDART00000145179
ENSDART00000145894 |
zgc:195245 |
|
chr15_-_16098531 Show fit | 2.31 |
ENSDART00000080377
|
aldolase C, fructose-bisphosphate, a |
|
chr9_-_44953664 Show fit | 2.31 |
ENSDART00000188558
ENSDART00000185210 |
villin 1 |
|
chr7_+_49862837 Show fit | 2.29 |
ENSDART00000174315
|
solute carrier family 1 (glial high affinity glutamate transporter), member 2a |
|
chr6_-_39344259 Show fit | 2.09 |
ENSDART00000104074
|
zgc:158846 |
|
chr18_-_1185772 Show fit | 2.03 |
ENSDART00000143245
|
neuroplastin b |
|
chr7_+_38717624 Show fit | 1.96 |
ENSDART00000132522
|
synaptotagmin XIII |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.4 | 5.6 | GO:0072673 | lamellipodium morphogenesis(GO:0072673) regulation of lamellipodium morphogenesis(GO:2000392) |
0.3 | 2.6 | GO:0051965 | positive regulation of synapse assembly(GO:0051965) |
0.1 | 2.3 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
0.1 | 2.2 | GO:0014046 | dopamine secretion(GO:0014046) regulation of dopamine secretion(GO:0014059) |
0.1 | 2.0 | GO:0070593 | dendrite self-avoidance(GO:0070593) |
0.0 | 2.0 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome(GO:0000381) |
0.5 | 1.9 | GO:0007217 | tachykinin receptor signaling pathway(GO:0007217) |
0.0 | 1.9 | GO:0006836 | neurotransmitter transport(GO:0006836) |
0.1 | 1.8 | GO:0055064 | chloride ion homeostasis(GO:0055064) |
0.0 | 1.8 | GO:0061512 | protein localization to cilium(GO:0061512) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 5.6 | GO:0032433 | filopodium tip(GO:0032433) |
0.0 | 5.2 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.0 | 2.5 | GO:0042383 | sarcolemma(GO:0042383) |
0.8 | 2.3 | GO:0044316 | cone cell pedicle(GO:0044316) |
0.2 | 2.1 | GO:0045095 | keratin filament(GO:0045095) |
0.0 | 2.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.0 | 2.0 | GO:0070382 | exocytic vesicle(GO:0070382) |
0.0 | 1.9 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.0 | 1.8 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.1 | 1.7 | GO:0048788 | cytoskeleton of presynaptic active zone(GO:0048788) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.6 | GO:0005546 | phosphatidylinositol-4,5-bisphosphate binding(GO:0005546) |
0.0 | 5.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 4.5 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
0.0 | 3.7 | GO:0015293 | symporter activity(GO:0015293) |
0.1 | 2.9 | GO:0098632 | protein binding involved in cell-cell adhesion(GO:0098632) |
0.0 | 2.5 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
0.3 | 2.3 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
0.1 | 2.2 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.6 | 1.8 | GO:0031716 | calcitonin receptor binding(GO:0031716) |
0.1 | 1.8 | GO:0004971 | AMPA glutamate receptor activity(GO:0004971) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.0 | 1.0 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 0.8 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.5 | PID ALK1 PATHWAY | ALK1 signaling events |
0.0 | 0.5 | NABA COLLAGENS | Genes encoding collagen proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.8 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.1 | 1.5 | REACTOME THROMBOXANE SIGNALLING THROUGH TP RECEPTOR | Genes involved in Thromboxane signalling through TP receptor |
0.1 | 1.3 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.1 | 1.1 | REACTOME KERATAN SULFATE DEGRADATION | Genes involved in Keratan sulfate degradation |
0.1 | 1.0 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.1 | 0.8 | REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE | Genes involved in Sema4D induced cell migration and growth-cone collapse |
0.1 | 0.7 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
0.1 | 0.7 | REACTOME HS GAG BIOSYNTHESIS | Genes involved in HS-GAG biosynthesis |
0.0 | 0.7 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
0.0 | 0.7 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |