PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
prdm14 | dr11_v1_chr24_+_14451404_14451404 | -0.40 | 9.3e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_-_24135508 Show fit | 1.21 |
ENSDART00000171819
ENSDART00000103176 |
basal cell adhesion molecule (Lutheran blood group) |
|
chr21_-_14630831 Show fit | 1.06 |
ENSDART00000132142
ENSDART00000089967 |
calcium channel, voltage-dependent, N type, alpha 1B subunit, b |
|
chr10_+_573667 Show fit | 1.04 |
ENSDART00000110384
|
SMAD family member 4a |
|
chr12_+_39685485 Show fit | 0.91 |
ENSDART00000163403
|
|
|
chr4_-_22207873 Show fit | 0.88 |
ENSDART00000142140
|
protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 |
|
chr21_+_44300689 Show fit | 0.88 |
ENSDART00000186298
ENSDART00000142810 |
gamma-aminobutyric acid (GABA) A receptor, alpha 3 |
|
chr23_+_39558508 Show fit | 0.82 |
ENSDART00000017902
|
calcium/calmodulin-dependent protein kinase IGb |
|
chr12_-_6818676 Show fit | 0.76 |
ENSDART00000106391
|
protocadherin-related 15b |
|
chr21_-_21089781 Show fit | 0.73 |
ENSDART00000144361
|
ankyrin 1, erythrocytic b |
|
chr25_-_1235457 Show fit | 0.73 |
ENSDART00000093093
|
coronin, actin binding protein, 2Bb |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | GO:0048264 | determination of ventral identity(GO:0048264) |
0.0 | 0.9 | GO:0051932 | synaptic transmission, GABAergic(GO:0051932) |
0.1 | 0.8 | GO:0045475 | locomotor rhythm(GO:0045475) |
0.1 | 0.8 | GO:0050962 | detection of light stimulus involved in visual perception(GO:0050908) detection of light stimulus involved in sensory perception(GO:0050962) |
0.0 | 0.7 | GO:0003146 | heart jogging(GO:0003146) |
0.0 | 0.6 | GO:0006044 | N-acetylglucosamine metabolic process(GO:0006044) |
0.0 | 0.6 | GO:0006368 | transcription elongation from RNA polymerase II promoter(GO:0006368) |
0.2 | 0.5 | GO:0042998 | positive regulation of Golgi to plasma membrane protein transport(GO:0042998) positive regulation of establishment of protein localization to plasma membrane(GO:0090004) |
0.2 | 0.5 | GO:0060623 | regulation of chromosome condensation(GO:0060623) |
0.1 | 0.5 | GO:0006549 | isoleucine metabolic process(GO:0006549) isoleucine biosynthetic process(GO:0009097) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.1 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.1 | 1.0 | GO:0071144 | SMAD2-SMAD3 protein complex(GO:0071144) |
0.0 | 0.9 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 0.8 | GO:0032420 | stereocilium(GO:0032420) |
0.2 | 0.5 | GO:0005948 | acetolactate synthase complex(GO:0005948) |
0.0 | 0.4 | GO:0002116 | semaphorin receptor complex(GO:0002116) |
0.0 | 0.3 | GO:0042583 | chromaffin granule(GO:0042583) |
0.0 | 0.2 | GO:0097519 | DNA recombinase complex(GO:0097519) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.0 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
0.0 | 1.1 | GO:0005245 | voltage-gated calcium channel activity(GO:0005245) |
0.1 | 1.0 | GO:0070411 | I-SMAD binding(GO:0070411) |
0.1 | 0.9 | GO:0008503 | benzodiazepine receptor activity(GO:0008503) GABA-gated chloride ion channel activity(GO:0022851) |
0.1 | 0.7 | GO:0005412 | glucose:sodium symporter activity(GO:0005412) |
0.1 | 0.7 | GO:0030507 | spectrin binding(GO:0030507) |
0.2 | 0.5 | GO:0003984 | acetolactate synthase activity(GO:0003984) |
0.1 | 0.5 | GO:0071253 | connexin binding(GO:0071253) |
0.0 | 0.5 | GO:0000828 | inositol hexakisphosphate kinase activity(GO:0000828) |
0.0 | 0.4 | GO:0017154 | semaphorin receptor activity(GO:0017154) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.7 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.0 | 0.4 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.9 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.2 | 0.7 | REACTOME UNBLOCKING OF NMDA RECEPTOR GLUTAMATE BINDING AND ACTIVATION | Genes involved in Unblocking of NMDA receptor, glutamate binding and activation |
0.0 | 0.7 | REACTOME RECYCLING PATHWAY OF L1 | Genes involved in Recycling pathway of L1 |
0.0 | 0.3 | REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS | Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |
0.0 | 0.3 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.0 | 0.2 | REACTOME PLATELET CALCIUM HOMEOSTASIS | Genes involved in Platelet calcium homeostasis |