PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
prdm1a | dr11_v1_chr16_-_7443388_7443388 | -0.85 | 3.1e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr17_+_1063988 Show fit | 3.45 |
ENSDART00000160400
|
GTP cyclohydrolase I feedback regulator |
|
chr18_+_8812549 Show fit | 3.08 |
ENSDART00000017619
|
IMP (inosine 5'-monophosphate) dehydrogenase 1a |
|
chr23_-_21763598 Show fit | 2.75 |
ENSDART00000145408
|
vacuolar protein sorting 13 homolog D (S. cerevisiae) |
|
chr12_-_4028079 Show fit | 2.70 |
ENSDART00000128676
|
si:ch211-180a12.2 |
|
chr16_-_50181206 Show fit | 2.68 |
ENSDART00000148478
|
lens intrinsic membrane protein 2.5 |
|
chr14_+_35806605 Show fit | 2.48 |
ENSDART00000173093
|
glutamate receptor, ionotropic, AMPA 2b |
|
chr24_+_24923166 Show fit | 2.48 |
ENSDART00000065288
|
phosphate cytidylyltransferase 1, choline, beta a |
|
chr23_-_3703569 Show fit | 2.41 |
ENSDART00000143731
|
protein kinase C and casein kinase substrate in neurons 1a |
|
chr19_-_44955710 Show fit | 2.35 |
ENSDART00000165246
|
si:ch211-233f16.1 |
|
chr8_-_14052349 Show fit | 2.30 |
ENSDART00000135811
|
ATPase plasma membrane Ca2+ transporting 3a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 4.7 | GO:0002483 | antigen processing and presentation of endogenous peptide antigen(GO:0002483) antigen processing and presentation of endogenous antigen(GO:0019883) antigen processing and presentation of endogenous peptide antigen via MHC class I(GO:0019885) |
0.0 | 4.5 | GO:0051346 | negative regulation of hydrolase activity(GO:0051346) |
0.1 | 3.9 | GO:0007157 | heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules(GO:0007157) |
0.3 | 3.1 | GO:0006177 | GMP biosynthetic process(GO:0006177) GMP metabolic process(GO:0046037) |
0.0 | 2.9 | GO:0043547 | positive regulation of GTPase activity(GO:0043547) |
0.4 | 2.8 | GO:0045053 | protein retention in Golgi apparatus(GO:0045053) |
0.1 | 2.7 | GO:0006910 | phagocytosis, recognition(GO:0006910) |
0.0 | 2.5 | GO:0008654 | phospholipid biosynthetic process(GO:0008654) |
0.1 | 2.4 | GO:0097320 | membrane tubulation(GO:0097320) |
0.0 | 2.3 | GO:0051480 | regulation of cytosolic calcium ion concentration(GO:0051480) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.8 | GO:0005912 | adherens junction(GO:0005912) |
0.1 | 4.9 | GO:0043204 | perikaryon(GO:0043204) |
0.1 | 3.7 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.0 | 3.5 | GO:0031965 | nuclear membrane(GO:0031965) |
0.0 | 2.9 | GO:0019898 | extrinsic component of membrane(GO:0019898) |
0.1 | 2.7 | GO:0042571 | immunoglobulin complex, circulating(GO:0042571) |
0.0 | 2.2 | GO:0016342 | catenin complex(GO:0016342) |
0.0 | 2.1 | GO:0016459 | myosin complex(GO:0016459) |
0.4 | 2.0 | GO:0042584 | chromaffin granule membrane(GO:0042584) |
0.0 | 1.7 | GO:0005905 | clathrin-coated pit(GO:0005905) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.7 | GO:0004971 | AMPA glutamate receptor activity(GO:0004971) |
0.5 | 3.1 | GO:0003938 | IMP dehydrogenase activity(GO:0003938) |
0.0 | 2.8 | GO:0030246 | carbohydrate binding(GO:0030246) |
0.1 | 2.7 | GO:0034987 | immunoglobulin receptor binding(GO:0034987) |
0.0 | 2.7 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.5 | 2.5 | GO:0004105 | choline-phosphate cytidylyltransferase activity(GO:0004105) |
0.0 | 2.5 | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds(GO:0004553) |
0.0 | 2.5 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.1 | 2.3 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
0.0 | 2.3 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.7 | SIG IL4RECEPTOR IN B LYPHOCYTES | Genes related to IL4 rceptor signaling in B lymphocytes |
0.0 | 0.9 | PID ARF 3PATHWAY | Arf1 pathway |
0.0 | 0.8 | SIG CD40PATHWAYMAP | Genes related to CD40 signaling |
0.1 | 0.6 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.0 | 0.6 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.0 | 0.6 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.0 | 0.6 | PID CERAMIDE PATHWAY | Ceramide signaling pathway |
0.0 | 0.5 | PID RHOA PATHWAY | RhoA signaling pathway |
0.0 | 0.4 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.2 | REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS | Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. |
0.5 | 3.5 | REACTOME TETRAHYDROBIOPTERIN BH4 SYNTHESIS RECYCLING SALVAGE AND REGULATION | Genes involved in Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation |
0.1 | 1.5 | REACTOME TRAF6 MEDIATED IRF7 ACTIVATION | Genes involved in TRAF6 mediated IRF7 activation |
0.0 | 1.2 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.0 | 1.0 | REACTOME DOWNSTREAM SIGNAL TRANSDUCTION | Genes involved in Downstream signal transduction |
0.1 | 0.9 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
0.1 | 0.8 | REACTOME IMMUNOREGULATORY INTERACTIONS BETWEEN A LYMPHOID AND A NON LYMPHOID CELL | Genes involved in Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |
0.0 | 0.7 | REACTOME P75 NTR RECEPTOR MEDIATED SIGNALLING | Genes involved in p75 NTR receptor-mediated signalling |
0.0 | 0.6 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |
0.0 | 0.4 | REACTOME P38MAPK EVENTS | Genes involved in p38MAPK events |