PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
prrx1b | dr11_v1_chr20_+_34511678_34511678 | 0.71 | 6.2e-04 | Click! |
prrx1a | dr11_v1_chr2_-_23172708_23172708 | 0.21 | 3.8e-01 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 21.7 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.1 | 5.3 | GO:0006096 | glycolytic process(GO:0006096) |
1.2 | 4.8 | GO:0051503 | intracellular nucleoside transport(GO:0015859) purine nucleoside transmembrane transport(GO:0015860) purine nucleotide transport(GO:0015865) ATP transport(GO:0015867) purine ribonucleotide transport(GO:0015868) adenine nucleotide transport(GO:0051503) mitochondrial ATP transmembrane transport(GO:1990544) |
0.0 | 4.5 | GO:0007601 | visual perception(GO:0007601) |
0.2 | 2.7 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.3 | 1.7 | GO:0021767 | mammillary body development(GO:0021767) social behavior(GO:0035176) intraspecies interaction between organisms(GO:0051703) |
0.1 | 1.7 | GO:0010717 | regulation of epithelial to mesenchymal transition(GO:0010717) |
0.1 | 1.7 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.5 | 1.6 | GO:0014809 | regulation of skeletal muscle contraction by calcium ion signaling(GO:0014722) regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion(GO:0014809) |
0.2 | 1.6 | GO:0031579 | membrane raft assembly(GO:0001765) membrane raft organization(GO:0031579) plasma membrane raft assembly(GO:0044854) plasma membrane raft organization(GO:0044857) caveola assembly(GO:0070836) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 21.7 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 5.5 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.1 | 3.0 | GO:0030426 | growth cone(GO:0030426) |
0.1 | 2.3 | GO:0001917 | photoreceptor inner segment(GO:0001917) |
0.1 | 2.0 | GO:0043195 | terminal bouton(GO:0043195) |
0.0 | 2.0 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.1 | 1.7 | GO:0031045 | dense core granule(GO:0031045) |
0.3 | 1.6 | GO:0030891 | VCB complex(GO:0030891) |
0.2 | 1.6 | GO:0033018 | sarcoplasmic reticulum lumen(GO:0033018) |
0.2 | 1.5 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 4.8 | GO:0005471 | ATP:ADP antiporter activity(GO:0005471) |
0.0 | 4.6 | GO:0019905 | syntaxin binding(GO:0019905) |
0.0 | 4.1 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 2.3 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
0.0 | 2.3 | GO:0042393 | histone binding(GO:0042393) |
0.4 | 2.2 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.1 | 2.0 | GO:0004971 | AMPA glutamate receptor activity(GO:0004971) |
0.0 | 1.9 | GO:1902936 | phosphatidylinositol bisphosphate binding(GO:1902936) |
0.0 | 1.8 | GO:0003777 | microtubule motor activity(GO:0003777) |
0.0 | 1.7 | GO:0005540 | hyaluronic acid binding(GO:0005540) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | PID RB 1PATHWAY | Regulation of retinoblastoma protein |
0.0 | 1.2 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
0.0 | 1.1 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.1 | 0.9 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.0 | 0.8 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.8 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 0.6 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.5 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
0.1 | 0.4 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
0.0 | 0.3 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.8 | REACTOME INTERACTIONS OF VPR WITH HOST CELLULAR PROTEINS | Genes involved in Interactions of Vpr with host cellular proteins |
0.0 | 2.4 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.2 | 1.7 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.0 | 1.2 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.1 | 1.1 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.0 | 1.1 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.1 | 0.9 | REACTOME AMINE DERIVED HORMONES | Genes involved in Amine-derived hormones |
0.1 | 0.9 | REACTOME CRMPS IN SEMA3A SIGNALING | Genes involved in CRMPs in Sema3A signaling |
0.1 | 0.8 | REACTOME KERATAN SULFATE DEGRADATION | Genes involved in Keratan sulfate degradation |
0.1 | 0.8 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |