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PRJEB1986: zebrafish developmental stages transcriptome

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Results for raraa+rarab

Z-value: 0.18

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Transcription factors associated with raraa+rarab

Gene Symbol Gene ID Gene Info
rarab
ENSDARG00000034893 retinoic acid receptor, alpha b
raraa
ENSDARG00000056783 retinoic acid receptor, alpha a
rarab
ENSDARG00000111757 retinoic acid receptor, alpha b

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
rarabdr11_v1_chr3_-_33175583_331755830.312.0e-01Click!
raraadr11_v1_chr12_+_11007286_11007286-0.135.9e-01Click!

Activity profile of raraa+rarab motif

Sorted Z-values of raraa+rarab motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr21_+_28445052 0.17 ENSDART00000077871
pygma
phosphorylase, glycogen, muscle A
chr17_+_33340675 0.13 ENSDART00000184396
ENSDART00000077553
xdh
xanthine dehydrogenase
chr14_-_50892442 0.13 ENSDART00000174562
CDHR2
cadherin related family member 2
chr3_+_33367954 0.11 ENSDART00000103161
mpp2a
membrane protein, palmitoylated 2a (MAGUK p55 subfamily member 2)
chr2_+_52847049 0.10 ENSDART00000121980
creb3l3b
cAMP responsive element binding protein 3-like 3b
chr8_-_28342313 0.09 ENSDART00000005583
kdm5bb
lysine (K)-specific demethylase 5Bb
chr6_+_103361 0.08 ENSDART00000151899
ldlrb
low density lipoprotein receptor b
chr1_+_57348756 0.08 ENSDART00000063750
b3gntl1
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1
chr15_+_1199407 0.08 ENSDART00000163827
mfsd1
major facilitator superfamily domain containing 1
chr17_+_14711765 0.07 ENSDART00000012889
cx28.6
connexin 28.6
chr14_-_2001386 0.07 ENSDART00000170346
ENSDART00000163975
pcdh2g5
protocadherin 2 gamma 5
chr2_-_16449504 0.07 ENSDART00000144801
atr
ATR serine/threonine kinase
chr2_+_58841181 0.07 ENSDART00000164102
cirbpa
cold inducible RNA binding protein a
chr2_+_56213694 0.06 ENSDART00000162582
upf1
upf1 regulator of nonsense transcripts homolog (yeast)
chr18_+_3338228 0.05 ENSDART00000161520
gdpd4a
glycerophosphodiester phosphodiesterase domain containing 4a
chr17_+_53311618 0.05 ENSDART00000166517
asb2b
ankyrin repeat and SOCS box containing 2b
chr4_-_191736 0.05 ENSDART00000169187
ENSDART00000192054
ptpro
protein tyrosine phosphatase, receptor type, O
chr15_+_47582207 0.05 ENSDART00000159388
CABZ01087566.1

chr14_+_94946 0.05 ENSDART00000165766
ENSDART00000163778
mcm7
minichromosome maintenance complex component 7
chr14_+_94603 0.05 ENSDART00000162480
mcm7
minichromosome maintenance complex component 7
chr14_-_51855047 0.05 ENSDART00000088912
cplx1
complexin 1
chr6_-_8277221 0.05 ENSDART00000053869
slc44a2
solute carrier family 44 (choline transporter), member 2
chr24_-_36727922 0.04 ENSDART00000135142
si:ch73-334d15.1
si:ch73-334d15.1
chr18_+_43183749 0.04 ENSDART00000151166
nectin1b
nectin cell adhesion molecule 1b
chr18_+_7073130 0.04 ENSDART00000101216
ENSDART00000148947
si:dkey-88e18.2
si:dkey-88e18.2
chr19_+_19762183 0.04 ENSDART00000163611
ENSDART00000187604
hoxa3a
homeobox A3a
chr23_-_21758253 0.04 ENSDART00000046613
vps13d
vacuolar protein sorting 13 homolog D (S. cerevisiae)
chr8_+_37168570 0.04 ENSDART00000098636
csf1b
colony stimulating factor 1b (macrophage)
chr2_+_3696038 0.04 ENSDART00000150499
ENSDART00000136906
ENSDART00000164152
ENSDART00000128514
ENSDART00000108964
egfra
epidermal growth factor receptor a (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)
chr3_+_57268363 0.04 ENSDART00000180725
TMEM235 (1 of many)
transmembrane protein 235
chr21_-_43482426 0.04 ENSDART00000192901
ankrd46a
ankyrin repeat domain 46a
chr5_-_3885727 0.04 ENSDART00000143250
mlxipl
MLX interacting protein like
chr22_+_21324398 0.04 ENSDART00000168509
shc2
SHC (Src homology 2 domain containing) transforming protein 2
chr25_-_3132060 0.03 ENSDART00000014363
epx
eosinophil peroxidase
chr24_+_37723362 0.03 ENSDART00000136836
rab11fip3
RAB11 family interacting protein 3 (class II)
chr23_-_3703569 0.02 ENSDART00000143731
pacsin1a
protein kinase C and casein kinase substrate in neurons 1a
chr13_+_28618086 0.02 ENSDART00000087001
cnnm2a
cyclin and CBS domain divalent metal cation transport mediator 2a
chr9_+_500052 0.02 ENSDART00000166707
CU984600.1

chr8_-_13454281 0.02 ENSDART00000141959
CR354547.2

chr22_+_30009926 0.02 ENSDART00000142529
si:dkey-286j15.1
si:dkey-286j15.1
chr4_+_1530287 0.02 ENSDART00000067446
slc38a4
solute carrier family 38, member 4
chr24_+_42117231 0.02 ENSDART00000067734
snx16
sorting nexin 16
chr21_+_7332963 0.02 ENSDART00000169834
AP3B1
adaptor related protein complex 3 beta 1 subunit
chr21_+_2506013 0.02 ENSDART00000162351
hmgcrb
3-hydroxy-3-methylglutaryl-CoA reductase b
chr8_-_13442871 0.02 ENSDART00000144887
pimr106
Pim proto-oncogene, serine/threonine kinase, related 106
chr11_+_1608348 0.01 ENSDART00000162438
si:dkey-40c23.3
si:dkey-40c23.3
chr19_+_7938121 0.01 ENSDART00000140053
ENSDART00000146649
si:dkey-266f7.5
si:dkey-266f7.5
chr12_+_2677303 0.01 ENSDART00000093113
antxr1c
anthrax toxin receptor 1c
chr10_-_41450367 0.01 ENSDART00000122682
ENSDART00000189549
cabp1b
calcium binding protein 1b
chr22_+_20208185 0.01 ENSDART00000142748
si:dkey-110c1.7
si:dkey-110c1.7
chr18_+_1145571 0.01 ENSDART00000135055
rec114
REC114 meiotic recombination protein
chr17_+_14886828 0.01 ENSDART00000010507
ENSDART00000131052
ptger2a
prostaglandin E receptor 2a (subtype EP2)
chr18_+_19842569 0.01 ENSDART00000147470
iqch
IQ motif containing H
chr1_+_58332000 0.01 ENSDART00000145234
ggt1l2.1
gamma-glutamyltransferase 1 like 2.1
chr25_+_2263857 0.01 ENSDART00000076439
yars2
tyrosyl-tRNA synthetase 2, mitochondrial
chr14_-_52552875 0.01 ENSDART00000170107
ppp2r2ba
protein phosphatase 2, regulatory subunit B, beta a
chr23_+_25305431 0.01 ENSDART00000143291
RPL41
si:dkey-151g10.6
chr12_-_2869565 0.01 ENSDART00000152772
zdhhc16b
zinc finger, DHHC-type containing 16b
chr18_+_10820430 0.00 ENSDART00000161990
mical3a
microtubule associated monooxygenase, calponin and LIM domain containing 3a
chr8_-_13486258 0.00 ENSDART00000137459
pimr104
Pim proto-oncogene, serine/threonine kinase, related 104
chr14_+_36497250 0.00 ENSDART00000184727
TENM3
si:dkey-237h12.3
chr8_-_13419049 0.00 ENSDART00000133656
pimr101
Pim proto-oncogene, serine/threonine kinase, related 101

Network of associatons between targets according to the STRING database.

First level regulatory network of raraa+rarab

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0052576 carbohydrate localization(GO:0052575) carbohydrate storage(GO:0052576)
0.0 0.1 GO:0006145 purine nucleobase catabolic process(GO:0006145)
0.0 0.0 GO:0019062 virion attachment to host cell(GO:0019062) adhesion of symbiont to host(GO:0044406) adhesion of symbiont to host cell(GO:0044650)
0.0 0.1 GO:1901207 regulation of heart looping(GO:1901207)
0.0 0.0 GO:0015871 choline transport(GO:0015871)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0004645 phosphorylase activity(GO:0004645) glycogen phosphorylase activity(GO:0008184)
0.0 0.1 GO:0043140 ATP-dependent 3'-5' DNA helicase activity(GO:0043140) single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity(GO:1990518)
0.0 0.1 GO:0016725 oxidoreductase activity, acting on CH or CH2 groups(GO:0016725)
0.0 0.0 GO:0005006 epidermal growth factor-activated receptor activity(GO:0005006)
0.0 0.1 GO:0034648 histone demethylase activity (H3-dimethyl-K4 specific)(GO:0034648)
0.0 0.0 GO:0015220 choline transmembrane transporter activity(GO:0015220)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 REACTOME PURINE CATABOLISM Genes involved in Purine catabolism