PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
rarga | dr11_v1_chr23_+_35847200_35847200 | 0.50 | 3.0e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_40856534 Show fit | 9.57 |
ENSDART00000051950
|
guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 |
|
chr19_+_40856807 Show fit | 9.04 |
ENSDART00000139083
|
guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 |
|
chr7_+_15266093 Show fit | 3.33 |
ENSDART00000124676
|
synaptic vesicle glycoprotein 2Ba |
|
chr10_-_39321367 Show fit | 3.13 |
ENSDART00000129647
|
somatolactin beta |
|
chr13_-_22862133 Show fit | 2.98 |
ENSDART00000138563
|
phenazine biosynthesis-like protein domain containing 2 |
|
chr16_+_48753664 Show fit | 2.96 |
ENSDART00000155148
|
si:ch73-31d8.2 |
|
chr8_-_25329967 Show fit | 2.51 |
ENSDART00000139682
|
EPS8-like 3b |
|
chr25_+_3326885 Show fit | 2.51 |
ENSDART00000104866
|
lactate dehydrogenase Bb |
|
chr23_+_24789205 Show fit | 2.48 |
ENSDART00000088697
|
olfactomedin-like 3a |
|
chr15_+_19682013 Show fit | 2.46 |
ENSDART00000127368
|
si:dkey-4p15.5 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 18.4 | GO:0007186 | G-protein coupled receptor signaling pathway(GO:0007186) |
0.2 | 4.7 | GO:0015986 | energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986) |
0.3 | 3.8 | GO:0072078 | renal tubule morphogenesis(GO:0061333) nephron tubule morphogenesis(GO:0072078) nephron epithelium morphogenesis(GO:0072088) |
0.3 | 3.1 | GO:0051877 | pigment granule aggregation in cell center(GO:0051877) |
0.4 | 2.5 | GO:1900029 | positive regulation of ruffle assembly(GO:1900029) |
0.3 | 2.3 | GO:0034389 | lipid particle organization(GO:0034389) |
0.3 | 2.3 | GO:0032889 | regulation of vacuole fusion, non-autophagic(GO:0032889) |
0.5 | 2.0 | GO:0030091 | protein repair(GO:0030091) |
0.1 | 2.0 | GO:0035845 | photoreceptor cell outer segment organization(GO:0035845) |
0.1 | 2.0 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 18.6 | GO:0031680 | G-protein beta/gamma-subunit complex(GO:0031680) |
0.0 | 5.9 | GO:0009986 | cell surface(GO:0009986) |
1.0 | 4.2 | GO:0000275 | mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)(GO:0000275) |
0.0 | 3.3 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.0 | 2.7 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.1 | 2.5 | GO:0032587 | ruffle membrane(GO:0032587) |
0.3 | 2.3 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
0.0 | 2.3 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.3 | 2.0 | GO:0071914 | prominosome(GO:0071914) |
0.0 | 1.8 | GO:0034705 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 18.6 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
0.0 | 4.4 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.6 | 4.2 | GO:0004459 | L-lactate dehydrogenase activity(GO:0004459) |
0.4 | 4.2 | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism(GO:0046933) |
0.0 | 3.3 | GO:0016853 | isomerase activity(GO:0016853) |
1.0 | 3.1 | GO:0005131 | growth hormone receptor binding(GO:0005131) growth hormone activity(GO:0070186) |
0.6 | 2.4 | GO:0005528 | macrolide binding(GO:0005527) FK506 binding(GO:0005528) |
0.3 | 2.3 | GO:0004634 | phosphopyruvate hydratase activity(GO:0004634) |
0.3 | 2.2 | GO:0001972 | retinoic acid binding(GO:0001972) |
0.5 | 2.0 | GO:0033745 | L-methionine-(R)-S-oxide reductase activity(GO:0033745) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 18.6 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.0 | 1.8 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 1.8 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.0 | 1.7 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.0 | 0.9 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.0 | 0.9 | PID ARF6 TRAFFICKING PATHWAY | Arf6 trafficking events |
0.1 | 0.7 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
0.0 | 0.6 | ST GA12 PATHWAY | G alpha 12 Pathway |
0.0 | 0.3 | PID REELIN PATHWAY | Reelin signaling pathway |
0.0 | 0.3 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.7 | 18.6 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |
0.1 | 2.3 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.0 | 1.9 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.4 | 1.7 | REACTOME CYTOSOLIC SULFONATION OF SMALL MOLECULES | Genes involved in Cytosolic sulfonation of small molecules |
0.1 | 1.7 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.0 | 1.2 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.1 | 1.0 | REACTOME TRAF3 DEPENDENT IRF ACTIVATION PATHWAY | Genes involved in TRAF3-dependent IRF activation pathway |
0.1 | 0.9 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
0.0 | 0.9 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.0 | 0.8 | REACTOME INTERACTIONS OF VPR WITH HOST CELLULAR PROTEINS | Genes involved in Interactions of Vpr with host cellular proteins |