PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
rargb | dr11_v1_chr11_+_2089461_2089461 | 0.53 | 2.0e-02 | Click! |
pparab | dr11_v1_chr25_+_2229301_2229301 | 0.41 | 7.9e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_44027391 Show fit | 3.42 |
ENSDART00000145404
|
crystallin, beta B1 |
|
chr4_-_16853464 Show fit | 3.18 |
ENSDART00000125743
ENSDART00000164570 |
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3a |
|
chr6_-_13783604 Show fit | 3.00 |
ENSDART00000149536
ENSDART00000041269 ENSDART00000150102 |
crystallin, beta A2a |
|
chr16_+_12022543 Show fit | 2.79 |
ENSDART00000012673
|
guanine nucleotide binding protein (G protein), beta polypeptide 3a |
|
chr23_-_45504991 Show fit | 2.43 |
ENSDART00000148761
|
collagen type XXIV alpha 1 |
|
chr12_-_4683325 Show fit | 2.37 |
ENSDART00000152771
|
si:ch211-255p10.3 |
|
chr20_+_5564042 Show fit | 2.31 |
ENSDART00000090934
ENSDART00000127050 |
neurexin 3b |
|
chr11_+_30729745 Show fit | 2.28 |
ENSDART00000103270
|
solute carrier family 22 (organic anion transporter), member 7a |
|
chr17_-_12385308 Show fit | 2.23 |
ENSDART00000080927
|
synaptosomal-associated protein, 25b |
|
chr16_+_26012569 Show fit | 2.19 |
ENSDART00000148846
|
protease, serine, 59, tandem duplicate 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 9.0 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.3 | 3.4 | GO:0036368 | cone photoresponse recovery(GO:0036368) |
0.1 | 3.4 | GO:0035435 | phosphate ion transmembrane transport(GO:0035435) |
0.0 | 3.4 | GO:0007601 | visual perception(GO:0007601) |
0.0 | 3.3 | GO:0098656 | anion transmembrane transport(GO:0098656) |
0.1 | 2.8 | GO:0042738 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.2 | 2.6 | GO:0045162 | clustering of voltage-gated sodium channels(GO:0045162) |
0.6 | 2.3 | GO:0015820 | branched-chain amino acid transport(GO:0015803) leucine transport(GO:0015820) |
0.3 | 2.2 | GO:0031444 | slow-twitch skeletal muscle fiber contraction(GO:0031444) |
0.1 | 2.2 | GO:0006825 | copper ion transport(GO:0006825) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.2 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.1 | 5.3 | GO:0005746 | mitochondrial respiratory chain(GO:0005746) |
0.1 | 3.9 | GO:0031305 | integral component of mitochondrial inner membrane(GO:0031305) |
0.1 | 2.9 | GO:0005758 | mitochondrial intermembrane space(GO:0005758) organelle envelope lumen(GO:0031970) |
0.0 | 2.9 | GO:0014069 | postsynaptic density(GO:0014069) |
0.0 | 2.6 | GO:0005865 | striated muscle thin filament(GO:0005865) myofilament(GO:0036379) |
0.8 | 2.4 | GO:0005592 | collagen type XI trimer(GO:0005592) |
0.0 | 2.3 | GO:0030424 | axon(GO:0030424) |
0.4 | 2.2 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
0.0 | 2.1 | GO:0016459 | myosin complex(GO:0016459) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 10.5 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.4 | 5.8 | GO:0031682 | G-protein gamma-subunit binding(GO:0031682) |
0.0 | 5.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 4.6 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.0 | 3.9 | GO:0015293 | symporter activity(GO:0015293) |
0.1 | 3.5 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
0.2 | 3.4 | GO:0005315 | inorganic phosphate transmembrane transporter activity(GO:0005315) |
0.0 | 3.1 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.0 | 2.9 | GO:0003774 | motor activity(GO:0003774) |
0.1 | 2.5 | GO:0005523 | tropomyosin binding(GO:0005523) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.3 | NABA COLLAGENS | Genes encoding collagen proteins |
0.1 | 2.1 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.0 | 2.1 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.0 | 1.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.0 | 1.1 | PID FOXO PATHWAY | FoxO family signaling |
0.0 | 1.1 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 1.1 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 0.9 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.0 | 0.7 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.0 | 0.6 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.1 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.1 | 3.3 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 3.0 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.2 | 2.6 | REACTOME PROSTACYCLIN SIGNALLING THROUGH PROSTACYCLIN RECEPTOR | Genes involved in Prostacyclin signalling through prostacyclin receptor |
0.1 | 1.3 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |
0.1 | 1.3 | REACTOME PKA MEDIATED PHOSPHORYLATION OF CREB | Genes involved in PKA-mediated phosphorylation of CREB |
0.1 | 1.3 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.1 | 1.3 | REACTOME GABA RECEPTOR ACTIVATION | Genes involved in GABA receptor activation |
0.3 | 1.2 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |
0.1 | 1.1 | REACTOME YAP1 AND WWTR1 TAZ STIMULATED GENE EXPRESSION | Genes involved in YAP1- and WWTR1 (TAZ)-stimulated gene expression |