PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
rbpja | dr11_v1_chr1_+_14454663_14454663 | 0.92 | 3.0e-08 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr23_-_45705525 Show fit | 4.60 |
ENSDART00000148959
|
endothelin receptor type Ab |
|
chr3_+_41917499 Show fit | 4.05 |
ENSDART00000028673
|
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase |
|
chr6_+_30430591 Show fit | 3.70 |
ENSDART00000108943
|
shroom family member 2a |
|
chr10_-_10864331 Show fit | 3.07 |
ENSDART00000122657
|
NOTCH regulated ankyrin repeat protein a |
|
chr13_-_49819027 Show fit | 2.99 |
ENSDART00000067824
|
beta-1,3-N-acetylgalactosaminyltransferase 2 |
|
chr23_-_21446985 Show fit | 2.71 |
ENSDART00000044080
|
hairy-related 12 |
|
chr6_-_9695294 Show fit | 2.63 |
ENSDART00000162728
|
NOP58 ribonucleoprotein homolog (yeast) |
|
chr10_-_10863936 Show fit | 2.61 |
ENSDART00000180568
|
NOTCH regulated ankyrin repeat protein a |
|
chr1_-_23370395 Show fit | 2.51 |
ENSDART00000143014
ENSDART00000126785 ENSDART00000159138 |
PDS5 cohesin associated factor A |
|
chr19_+_42609132 Show fit | 2.47 |
ENSDART00000010104
|
cartilage associated protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.7 | GO:0006888 | ER to Golgi vesicle-mediated transport(GO:0006888) |
0.7 | 4.6 | GO:0003319 | cardioblast migration to the midline involved in heart rudiment formation(GO:0003319) |
0.1 | 4.4 | GO:0030199 | collagen fibril organization(GO:0030199) |
0.0 | 4.3 | GO:0000398 | RNA splicing, via transesterification reactions(GO:0000375) RNA splicing, via transesterification reactions with bulged adenosine as nucleophile(GO:0000377) mRNA splicing, via spliceosome(GO:0000398) |
0.7 | 4.1 | GO:0055016 | hypochord development(GO:0055016) |
0.0 | 3.8 | GO:0042254 | ribosome biogenesis(GO:0042254) |
0.3 | 3.7 | GO:0045176 | asymmetric protein localization(GO:0008105) apical protein localization(GO:0045176) |
0.0 | 3.5 | GO:0007219 | Notch signaling pathway(GO:0007219) |
0.7 | 3.3 | GO:0070986 | left/right axis specification(GO:0070986) |
0.3 | 3.2 | GO:0002043 | blood vessel endothelial cell proliferation involved in sprouting angiogenesis(GO:0002043) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.8 | GO:0000139 | Golgi membrane(GO:0000139) |
0.1 | 4.1 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
0.1 | 3.7 | GO:0030864 | cortical actin cytoskeleton(GO:0030864) |
0.1 | 3.3 | GO:0033116 | endoplasmic reticulum-Golgi intermediate compartment membrane(GO:0033116) |
0.0 | 3.3 | GO:0010008 | endosome membrane(GO:0010008) |
0.1 | 2.9 | GO:0071013 | catalytic step 2 spliceosome(GO:0071013) |
0.4 | 2.6 | GO:0031428 | box C/D snoRNP complex(GO:0031428) |
0.5 | 2.4 | GO:0018444 | translation release factor complex(GO:0018444) |
0.2 | 2.4 | GO:0005742 | mitochondrial outer membrane translocase complex(GO:0005742) |
0.0 | 2.1 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 17.4 | GO:0046983 | protein dimerization activity(GO:0046983) |
0.7 | 4.6 | GO:0004962 | endothelin receptor activity(GO:0004962) |
0.1 | 4.4 | GO:0005518 | collagen binding(GO:0005518) |
1.0 | 4.1 | GO:0033829 | O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity(GO:0033829) |
0.0 | 3.7 | GO:0051015 | actin filament binding(GO:0051015) |
0.0 | 3.3 | GO:0035091 | phosphatidylinositol binding(GO:0035091) |
0.1 | 3.0 | GO:0008376 | acetylgalactosaminyltransferase activity(GO:0008376) |
0.1 | 2.6 | GO:0030515 | snoRNA binding(GO:0030515) |
0.3 | 2.5 | GO:0016918 | retinal binding(GO:0016918) |
0.2 | 2.4 | GO:0003747 | translation release factor activity(GO:0003747) translation termination factor activity(GO:0008079) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.8 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.0 | 2.8 | PID FGF PATHWAY | FGF signaling pathway |
0.1 | 2.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.1 | 1.9 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.1 | 1.8 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 1.1 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
0.0 | 0.9 | PID RAC1 PATHWAY | RAC1 signaling pathway |
0.0 | 0.6 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
0.0 | 0.5 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 0.4 | PID ERBB4 PATHWAY | ErbB4 signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.7 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.2 | 3.8 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
0.1 | 2.5 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.1 | 2.5 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 2.4 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.1 | 2.3 | REACTOME MITOCHONDRIAL TRNA AMINOACYLATION | Genes involved in Mitochondrial tRNA aminoacylation |
0.1 | 2.0 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.2 | 1.9 | REACTOME FGFR4 LIGAND BINDING AND ACTIVATION | Genes involved in FGFR4 ligand binding and activation |
0.1 | 1.7 | REACTOME RNA POL III TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase III Transcription Termination |
0.0 | 1.6 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |