PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
rel | dr11_v1_chr13_-_25819825_25819825 | -0.06 | 8.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr13_-_22843562 Show fit | 1.05 |
ENSDART00000142738
|
phenazine biosynthesis like protein domain containing |
|
chr8_+_47633438 Show fit | 1.04 |
ENSDART00000139096
|
si:ch211-251b21.1 |
|
chr1_+_12135129 Show fit | 1.02 |
ENSDART00000126020
|
serine peptidase inhibitor, Kazal type 4 |
|
chr2_-_51772438 Show fit | 1.02 |
ENSDART00000170241
|
Danio rerio three-finger protein 5 (LOC100003647), mRNA. |
|
chr2_+_45191049 Show fit | 0.92 |
ENSDART00000165392
|
chemokine (C-C motif) ligand 20a, duplicate 3 |
|
chr20_+_33981946 Show fit | 0.87 |
ENSDART00000131775
|
si:dkey-51e6.1 |
|
chr11_-_3552067 Show fit | 0.84 |
ENSDART00000163656
|
si:dkey-33m11.6 |
|
chr2_+_42191592 Show fit | 0.79 |
ENSDART00000144716
|
caveolae associated protein 4a |
|
chr17_+_20205185 Show fit | 0.77 |
ENSDART00000167007
|
gonadotropin-releasing hormone 3 |
|
chr14_+_36885524 Show fit | 0.77 |
ENSDART00000032547
|
leukocyte cell-derived chemotaxin 2 like |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.9 | GO:0048247 | lymphocyte chemotaxis(GO:0048247) |
0.0 | 1.0 | GO:0006414 | translational elongation(GO:0006414) |
0.0 | 1.0 | GO:0035249 | synaptic transmission, glutamatergic(GO:0035249) |
0.3 | 0.9 | GO:0035971 | peptidyl-histidine dephosphorylation(GO:0035971) |
0.2 | 0.9 | GO:0015670 | carbon dioxide transport(GO:0015670) |
0.0 | 0.9 | GO:0071222 | cellular response to molecule of bacterial origin(GO:0071219) cellular response to lipopolysaccharide(GO:0071222) |
0.0 | 0.8 | GO:0036444 | calcium ion transmembrane import into mitochondrion(GO:0036444) |
0.0 | 0.8 | GO:0042446 | hormone biosynthetic process(GO:0042446) |
0.2 | 0.7 | GO:0035994 | response to muscle stretch(GO:0035994) |
0.2 | 0.6 | GO:1901533 | negative regulation of hematopoietic progenitor cell differentiation(GO:1901533) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 1.0 | GO:0032983 | kainate selective glutamate receptor complex(GO:0032983) |
0.0 | 1.0 | GO:0005901 | caveola(GO:0005901) plasma membrane raft(GO:0044853) |
0.1 | 0.8 | GO:1990246 | uniplex complex(GO:1990246) |
0.1 | 0.5 | GO:0042613 | MHC class II protein complex(GO:0042613) |
0.0 | 0.5 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.0 | 0.4 | GO:0005952 | cAMP-dependent protein kinase complex(GO:0005952) |
0.0 | 0.3 | GO:0071565 | nBAF complex(GO:0071565) |
0.0 | 0.2 | GO:0005751 | mitochondrial respiratory chain complex IV(GO:0005751) |
0.0 | 0.2 | GO:0048179 | activin receptor complex(GO:0048179) |
0.0 | 0.2 | GO:0030315 | T-tubule(GO:0030315) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.2 | GO:0048020 | CCR chemokine receptor binding(GO:0048020) |
0.3 | 1.0 | GO:0015277 | kainate selective glutamate receptor activity(GO:0015277) |
0.0 | 1.0 | GO:0003746 | translation elongation factor activity(GO:0003746) |
0.2 | 0.9 | GO:0101006 | protein histidine phosphatase activity(GO:0101006) |
0.3 | 0.8 | GO:0031530 | gonadotropin hormone-releasing hormone activity(GO:0005183) gonadotropin-releasing hormone receptor binding(GO:0031530) |
0.0 | 0.8 | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor(GO:0016628) |
0.0 | 0.7 | GO:0008307 | structural constituent of muscle(GO:0008307) |
0.2 | 0.6 | GO:0051916 | granulocyte colony-stimulating factor binding(GO:0051916) |
0.1 | 0.6 | GO:0003796 | lysozyme activity(GO:0003796) |
0.1 | 0.6 | GO:0001642 | group III metabotropic glutamate receptor activity(GO:0001642) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.0 | 0.4 | PID EPHA FWDPATHWAY | EPHA forward signaling |
0.0 | 0.2 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
0.0 | 0.1 | PID ANGIOPOIETIN RECEPTOR PATHWAY | Angiopoietin receptor Tie2-mediated signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.0 | 0.7 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.0 | 0.5 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.0 | 0.3 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.0 | 0.2 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.0 | 0.2 | REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF RAS | Genes involved in CREB phosphorylation through the activation of Ras |
0.0 | 0.1 | REACTOME ENDOSOMAL VACUOLAR PATHWAY | Genes involved in Endosomal/Vacuolar pathway |
0.0 | 0.1 | REACTOME PHOSPHORYLATION OF CD3 AND TCR ZETA CHAINS | Genes involved in Phosphorylation of CD3 and TCR zeta chains |
0.0 | 0.1 | REACTOME NFKB IS ACTIVATED AND SIGNALS SURVIVAL | Genes involved in NF-kB is activated and signals survival |