PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
rest | dr11_v1_chr14_-_52433292_52433292 | -0.68 | 1.5e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_+_17676745 Show fit | 44.40 |
ENSDART00000030665
|
solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 |
|
chr5_-_29643930 Show fit | 31.00 |
ENSDART00000161250
|
glutamate receptor, ionotropic, N-methyl D-aspartate 1b |
|
chr5_-_29643381 Show fit | 28.62 |
ENSDART00000034849
|
glutamate receptor, ionotropic, N-methyl D-aspartate 1b |
|
chr17_-_12385308 Show fit | 24.39 |
ENSDART00000080927
|
synaptosomal-associated protein, 25b |
|
chr21_+_11468642 Show fit | 23.83 |
ENSDART00000041869
|
glutamate receptor, ionotropic, N-methyl D-aspartate 1a |
|
chr15_+_36156986 Show fit | 23.70 |
ENSDART00000059791
|
somatostatin 1, tandem duplicate 1 |
|
chr21_-_42100471 Show fit | 23.06 |
ENSDART00000166148
|
gamma-aminobutyric acid (GABA) A receptor, alpha 1 |
|
chr25_-_22639133 Show fit | 21.22 |
ENSDART00000073583
|
immunoglobulin superfamily containing leucine-rich repeat 2 |
|
chr16_+_46148990 Show fit | 20.59 |
ENSDART00000083919
|
synaptic vesicle glycoprotein 2A |
|
chr25_+_35250976 Show fit | 20.08 |
ENSDART00000003494
|
solute carrier family 17 (vesicular glutamate transporter), member 6a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.6 | 101.3 | GO:0035235 | ionotropic glutamate receptor signaling pathway(GO:0035235) |
0.2 | 51.4 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
11.1 | 44.4 | GO:1990544 | intracellular nucleoside transport(GO:0015859) purine nucleoside transmembrane transport(GO:0015860) purine nucleotide transport(GO:0015865) ATP transport(GO:0015867) purine ribonucleotide transport(GO:0015868) adenine nucleotide transport(GO:0051503) mitochondrial ATP transmembrane transport(GO:1990544) |
4.0 | 32.1 | GO:0098700 | neurotransmitter loading into synaptic vesicle(GO:0098700) |
1.4 | 31.1 | GO:0007631 | feeding behavior(GO:0007631) |
2.3 | 30.2 | GO:1990504 | dense core granule exocytosis(GO:1990504) |
3.7 | 29.8 | GO:0043092 | amino acid import(GO:0043090) L-amino acid import(GO:0043092) |
0.6 | 28.8 | GO:0050432 | dopamine secretion(GO:0014046) regulation of dopamine secretion(GO:0014059) catecholamine secretion(GO:0050432) regulation of catecholamine secretion(GO:0050433) |
1.7 | 24.4 | GO:0045162 | clustering of voltage-gated sodium channels(GO:0045162) |
0.1 | 23.7 | GO:0030334 | regulation of cell migration(GO:0030334) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 133.6 | GO:0005576 | extracellular region(GO:0005576) |
6.8 | 101.3 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
0.0 | 95.4 | GO:0016021 | integral component of membrane(GO:0016021) |
0.1 | 83.0 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.1 | 44.4 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.1 | 36.9 | GO:0045202 | synapse(GO:0045202) |
5.7 | 34.4 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
2.1 | 32.1 | GO:0030285 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
1.5 | 30.3 | GO:0032588 | trans-Golgi network membrane(GO:0032588) |
0.7 | 30.2 | GO:0098978 | glutamatergic synapse(GO:0098978) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.1 | 101.3 | GO:0004972 | NMDA glutamate receptor activity(GO:0004972) |
0.0 | 83.8 | GO:0046872 | metal ion binding(GO:0046872) |
0.1 | 68.3 | GO:0005509 | calcium ion binding(GO:0005509) |
11.1 | 44.4 | GO:0005471 | ATP:ADP antiporter activity(GO:0005471) |
1.2 | 40.8 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
0.9 | 34.4 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
2.5 | 32.1 | GO:0005326 | neurotransmitter transporter activity(GO:0005326) |
6.2 | 31.1 | GO:0031843 | neuropeptide Y receptor binding(GO:0031841) type 2 neuropeptide Y receptor binding(GO:0031843) |
2.1 | 29.8 | GO:0015187 | glycine transmembrane transporter activity(GO:0015187) |
0.6 | 28.8 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 20.3 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.6 | 16.3 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.6 | 15.2 | PID RAS PATHWAY | Regulation of Ras family activation |
0.1 | 12.9 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.3 | 9.7 | PID ATM PATHWAY | ATM pathway |
0.1 | 4.0 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.2 | 3.8 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.1 | 2.0 | PID ARF 3PATHWAY | Arf1 pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 44.4 | REACTOME INTERACTIONS OF VPR WITH HOST CELLULAR PROTEINS | Genes involved in Interactions of Vpr with host cellular proteins |
2.0 | 29.8 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
1.5 | 23.1 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.2 | 19.5 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
3.8 | 15.2 | REACTOME RAS ACTIVATION UOPN CA2 INFUX THROUGH NMDA RECEPTOR | Genes involved in Ras activation uopn Ca2+ infux through NMDA receptor |
0.8 | 12.9 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.8 | 11.9 | REACTOME HS GAG BIOSYNTHESIS | Genes involved in HS-GAG biosynthesis |
1.2 | 11.6 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |
0.3 | 9.7 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
1.3 | 8.9 | REACTOME GLUTAMATE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Glutamate Neurotransmitter Release Cycle |