PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
rfx1a | dr11_v1_chr3_-_19200571_19200651 | 0.66 | 2.1e-03 | Click! |
rfx1b | dr11_v1_chr1_-_54107321_54107321 | 0.57 | 1.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr20_-_52902693 Show fit | 3.03 |
ENSDART00000166115
ENSDART00000161050 |
cathepsin Bb |
|
chr13_-_51952020 Show fit | 2.23 |
ENSDART00000181079
|
|
|
chr8_-_53488832 Show fit | 1.88 |
ENSDART00000191801
|
choline dehydrogenase |
|
chr8_-_5220125 Show fit | 1.56 |
ENSDART00000035676
|
BCL2 interacting protein 3 like a |
|
chr21_-_1625976 Show fit | 1.38 |
ENSDART00000066621
|
vitelline membrane outer layer 1 homolog b |
|
chr23_+_10469955 Show fit | 1.34 |
ENSDART00000140557
|
tensin 2a |
|
chr23_+_44665230 Show fit | 1.26 |
ENSDART00000144958
|
calmodulin binding transcription activator 2 |
|
chr24_-_39772045 Show fit | 1.19 |
ENSDART00000087441
|
si:ch211-276f18.2 |
|
chr16_-_9869056 Show fit | 1.11 |
ENSDART00000149312
|
neurocalcin delta a |
|
chr25_+_34407740 Show fit | 1.09 |
ENSDART00000012677
|
si:dkey-37f18.2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 1.9 | GO:0019695 | choline metabolic process(GO:0019695) |
0.0 | 1.7 | GO:0031098 | stress-activated protein kinase signaling cascade(GO:0031098) |
0.2 | 1.6 | GO:0097345 | mitochondrial outer membrane permeabilization(GO:0097345) |
0.2 | 1.1 | GO:0098815 | postsynaptic density assembly(GO:0097107) modulation of excitatory postsynaptic potential(GO:0098815) positive regulation of excitatory postsynaptic potential(GO:2000463) |
0.1 | 1.1 | GO:0021551 | central nervous system morphogenesis(GO:0021551) |
0.2 | 1.0 | GO:0048855 | adenohypophysis morphogenesis(GO:0048855) |
0.1 | 1.0 | GO:0071850 | mitotic cell cycle arrest(GO:0071850) |
0.0 | 1.0 | GO:0032465 | regulation of cytokinesis(GO:0032465) |
0.3 | 0.9 | GO:0071498 | cellular response to fluid shear stress(GO:0071498) |
0.2 | 0.9 | GO:0016332 | establishment or maintenance of polarity of embryonic epithelium(GO:0016332) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.3 | GO:0005764 | lysosome(GO:0005764) |
0.6 | 1.7 | GO:0031310 | integral component of vacuolar membrane(GO:0031166) intrinsic component of vacuolar membrane(GO:0031310) |
0.0 | 1.6 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
0.0 | 1.6 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.0 | 1.3 | GO:0098636 | protein complex involved in cell adhesion(GO:0098636) |
0.1 | 1.1 | GO:0016328 | lateral plasma membrane(GO:0016328) |
0.0 | 1.1 | GO:0008328 | ionotropic glutamate receptor complex(GO:0008328) neurotransmitter receptor complex(GO:0098878) |
0.2 | 1.0 | GO:1902636 | kinociliary basal body(GO:1902636) |
0.0 | 0.9 | GO:0001917 | photoreceptor inner segment(GO:0001917) |
0.0 | 0.9 | GO:0031305 | integral component of mitochondrial inner membrane(GO:0031305) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.9 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.0 | 1.9 | GO:0050660 | flavin adenine dinucleotide binding(GO:0050660) |
0.2 | 1.1 | GO:0030160 | GKAP/Homer scaffold activity(GO:0030160) |
0.0 | 1.0 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
0.1 | 0.9 | GO:0022889 | serine transmembrane transporter activity(GO:0022889) |
0.1 | 0.9 | GO:0015181 | arginine transmembrane transporter activity(GO:0015181) |
0.1 | 0.9 | GO:0015271 | outward rectifier potassium channel activity(GO:0015271) |
0.0 | 0.9 | GO:0004629 | phosphatidylinositol phospholipase C activity(GO:0004435) phospholipase C activity(GO:0004629) |
0.0 | 0.9 | GO:0015485 | cholesterol binding(GO:0015485) |
0.2 | 0.8 | GO:0003997 | acyl-CoA oxidase activity(GO:0003997) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 0.8 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.0 | 0.7 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 0.4 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.0 | 0.4 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.0 | 0.4 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 0.3 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.0 | 0.2 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.0 | 0.8 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
0.2 | 0.7 | REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF CAMKII | Genes involved in CREB phosphorylation through the activation of CaMKII |
0.0 | 0.7 | REACTOME YAP1 AND WWTR1 TAZ STIMULATED GENE EXPRESSION | Genes involved in YAP1- and WWTR1 (TAZ)-stimulated gene expression |
0.0 | 0.5 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.0 | 0.5 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
0.0 | 0.5 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.1 | 0.4 | REACTOME REGULATION OF THE FANCONI ANEMIA PATHWAY | Genes involved in Regulation of the Fanconi anemia pathway |
0.0 | 0.4 | REACTOME SEMA3A PLEXIN REPULSION SIGNALING BY INHIBITING INTEGRIN ADHESION | Genes involved in SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion |
0.0 | 0.3 | REACTOME VITAMIN B5 PANTOTHENATE METABOLISM | Genes involved in Vitamin B5 (pantothenate) metabolism |