PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000014550 | regulatory factor X, 3 (influences HLA class II expression) | |
ENSDARG00000013575 | regulatory factor X, 2 (influences HLA class II expression) | |
ENSDARG00000026395 | regulatory factor X, 4 | |
ENSDARG00000116861 | regulatory factor X, 4 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
rfx2 | dr11_v1_chr8_-_20138054_20138251 | -0.42 | 7.5e-02 | Click! |
rfx4 | dr11_v1_chr18_-_15373620_15373620 | -0.33 | 1.7e-01 | Click! |
rfx3 | dr11_v1_chr10_-_641609_641609 | -0.31 | 1.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_+_68789 Show fit | 3.04 |
ENSDART00000058569
|
claudin 1 |
|
chr20_-_9436521 Show fit | 1.75 |
ENSDART00000133000
|
zgc:101840 |
|
chr15_+_47903864 Show fit | 1.56 |
ENSDART00000063835
|
orthodenticle homolog 5 |
|
chr11_-_279328 Show fit | 1.54 |
ENSDART00000066179
|
neuropeptide FF-amide peptide precursor like |
|
chr3_-_1190132 Show fit | 1.45 |
ENSDART00000149709
|
single-pass membrane protein with aspartate-rich tail 1a |
|
chr16_+_24632096 Show fit | 1.38 |
ENSDART00000157237
|
si:dkey-56f14.7 |
|
chr5_-_21044693 Show fit | 1.36 |
ENSDART00000140298
|
si:dkey-13n15.2 |
|
chr19_-_10551394 Show fit | 1.16 |
ENSDART00000186815
ENSDART00000181041 |
lens intrinsic membrane protein 2.4 |
|
chr16_-_45069882 Show fit | 1.12 |
ENSDART00000058384
|
glyceraldehyde-3-phosphate dehydrogenase, spermatogenic |
|
chr13_+_33117528 Show fit | 1.02 |
ENSDART00000085719
|
si:ch211-10a23.2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.7 | GO:0043297 | apical junction assembly(GO:0043297) bicellular tight junction assembly(GO:0070830) |
0.1 | 1.5 | GO:0036444 | calcium ion transmembrane import into mitochondrion(GO:0036444) |
0.0 | 1.5 | GO:0007218 | neuropeptide signaling pathway(GO:0007218) |
0.1 | 1.4 | GO:0090110 | cargo loading into COPII-coated vesicle(GO:0090110) |
0.0 | 1.4 | GO:0032922 | circadian regulation of gene expression(GO:0032922) |
0.1 | 1.0 | GO:0009180 | ADP biosynthetic process(GO:0006172) purine nucleoside diphosphate biosynthetic process(GO:0009136) purine ribonucleoside diphosphate biosynthetic process(GO:0009180) |
0.1 | 1.0 | GO:0021631 | optic nerve morphogenesis(GO:0021631) |
0.1 | 0.8 | GO:0001881 | receptor recycling(GO:0001881) |
0.1 | 0.8 | GO:0035493 | SNARE complex assembly(GO:0035493) |
0.0 | 0.8 | GO:1903670 | regulation of sprouting angiogenesis(GO:1903670) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.0 | GO:0005923 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.1 | 1.5 | GO:1990246 | uniplex complex(GO:1990246) |
0.1 | 1.4 | GO:0030127 | COPII vesicle coat(GO:0030127) |
0.0 | 1.2 | GO:0045271 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
0.0 | 1.1 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
0.1 | 1.0 | GO:0031680 | G-protein beta/gamma-subunit complex(GO:0031680) |
0.0 | 1.0 | GO:0005581 | collagen trimer(GO:0005581) |
0.0 | 0.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
0.0 | 0.8 | GO:0005680 | anaphase-promoting complex(GO:0005680) |
0.0 | 0.8 | GO:0036064 | ciliary basal body(GO:0036064) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.5 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 1.5 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
0.0 | 1.3 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
0.3 | 1.1 | GO:0043891 | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity(GO:0004365) glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity(GO:0043891) |
0.0 | 1.1 | GO:0017124 | SH3 domain binding(GO:0017124) |
0.0 | 1.0 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
0.0 | 1.0 | GO:0005546 | phosphatidylinositol-4,5-bisphosphate binding(GO:0005546) |
0.0 | 0.9 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.1 | 0.8 | GO:0004017 | adenylate kinase activity(GO:0004017) |
0.0 | 0.8 | GO:0019003 | GDP binding(GO:0019003) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.0 | PID NECTIN PATHWAY | Nectin adhesion pathway |
0.0 | 0.9 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.0 | 0.7 | ST DIFFERENTIATION PATHWAY IN PC12 CELLS | Differentiation Pathway in PC12 Cells; this is a specific case of PAC1 Receptor Pathway. |
0.0 | 0.5 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
0.0 | 0.4 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.0 | 0.4 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
0.0 | 0.3 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.0 | 0.3 | PID IGF1 PATHWAY | IGF1 pathway |
0.0 | 0.3 | ST PHOSPHOINOSITIDE 3 KINASE PATHWAY | PI3K Pathway |
0.0 | 0.3 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 3.0 | REACTOME TIGHT JUNCTION INTERACTIONS | Genes involved in Tight junction interactions |
0.1 | 1.1 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.1 | 1.0 | REACTOME INHIBITION OF INSULIN SECRETION BY ADRENALINE NORADRENALINE | Genes involved in Inhibition of Insulin Secretion by Adrenaline/Noradrenaline |
0.0 | 1.0 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.0 | 1.0 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 0.8 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
0.0 | 0.7 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
0.0 | 0.3 | REACTOME ACTIVATION OF CHAPERONE GENES BY ATF6 ALPHA | Genes involved in Activation of Chaperone Genes by ATF6-alpha |
0.0 | 0.3 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.0 | 0.2 | REACTOME PD1 SIGNALING | Genes involved in PD-1 signaling |