PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
rfx7a | dr11_v1_chr7_+_34506937_34506937 | -0.63 | 3.8e-03 | Click! |
rfx7b | dr11_v1_chr25_+_388258_388258 | -0.07 | 7.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr22_+_438714 Show fit | 3.24 |
ENSDART00000136491
|
cadherin, EGF LAG seven-pass G-type receptor 2 |
|
chr2_-_42960353 Show fit | 3.01 |
ENSDART00000098303
|
otoconin 90 |
|
chr4_-_78026285 Show fit | 2.87 |
ENSDART00000168273
|
chaperonin containing TCP1 subunit 2 |
|
chr10_-_22797959 Show fit | 2.56 |
ENSDART00000183269
|
procollagen C-endopeptidase enhancer a |
|
chr1_+_604127 Show fit | 2.43 |
ENSDART00000133165
|
junctional adhesion molecule 2a |
|
chr4_+_34343524 Show fit | 2.19 |
ENSDART00000171694
|
si:ch211-246b8.5 |
|
chr6_-_55297274 Show fit | 2.11 |
ENSDART00000184283
|
ubiquitin-conjugating enzyme E2C |
|
chr18_+_5618368 Show fit | 2.03 |
ENSDART00000159945
|
unc-51 like kinase 3 |
|
chr17_-_28811747 Show fit | 1.80 |
ENSDART00000001444
|
G2/M-phase specific E3 ubiquitin protein ligase |
|
chr11_-_40519886 Show fit | 1.76 |
ENSDART00000172819
|
migration and invasion inhibitory protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.2 | GO:0010389 | regulation of G2/M transition of mitotic cell cycle(GO:0010389) |
0.3 | 3.3 | GO:0002043 | blood vessel endothelial cell proliferation involved in sprouting angiogenesis(GO:0002043) |
0.2 | 3.2 | GO:0021754 | facial nucleus development(GO:0021754) |
0.2 | 3.0 | GO:0032309 | icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) arachidonate transport(GO:1903963) |
0.5 | 2.8 | GO:2000582 | positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582) |
0.3 | 2.8 | GO:0007080 | mitotic metaphase plate congression(GO:0007080) |
0.1 | 2.4 | GO:0070286 | axonemal dynein complex assembly(GO:0070286) |
0.1 | 2.4 | GO:0007520 | myoblast fusion(GO:0007520) |
0.0 | 2.2 | GO:0007224 | smoothened signaling pathway(GO:0007224) |
0.0 | 1.8 | GO:0060215 | primitive hemopoiesis(GO:0060215) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
0.2 | 3.1 | GO:0097546 | ciliary base(GO:0097546) |
0.1 | 3.1 | GO:0030286 | dynein complex(GO:0030286) |
0.2 | 2.8 | GO:0000940 | condensed chromosome outer kinetochore(GO:0000940) |
0.1 | 2.8 | GO:0098636 | protein complex involved in cell adhesion(GO:0098636) |
0.2 | 2.6 | GO:0036038 | MKS complex(GO:0036038) |
0.1 | 2.1 | GO:0005930 | axoneme(GO:0005930) ciliary plasm(GO:0097014) |
0.0 | 2.1 | GO:0005814 | centriole(GO:0005814) |
0.4 | 2.0 | GO:0005879 | axonemal microtubule(GO:0005879) |
0.1 | 1.9 | GO:0090545 | NuRD complex(GO:0016581) CHD-type complex(GO:0090545) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.9 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
0.1 | 3.5 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.1 | 3.0 | GO:0004623 | phospholipase A2 activity(GO:0004623) |
0.1 | 3.0 | GO:0031491 | nucleosome binding(GO:0031491) |
0.1 | 2.9 | GO:0045505 | dynein intermediate chain binding(GO:0045505) |
0.3 | 2.8 | GO:0043515 | kinetochore binding(GO:0043515) |
0.1 | 1.9 | GO:0004535 | poly(A)-specific ribonuclease activity(GO:0004535) |
0.1 | 1.9 | GO:0001103 | RNA polymerase II repressing transcription factor binding(GO:0001103) |
0.2 | 1.6 | GO:0030619 | U1 snRNA binding(GO:0030619) |
0.0 | 1.5 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | PID BETA CATENIN DEG PATHWAY | Degradation of beta catenin |
0.1 | 1.0 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.0 | 0.9 | PID HEDGEHOG GLI PATHWAY | Hedgehog signaling events mediated by Gli proteins |
0.0 | 0.8 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
0.0 | 0.6 | PID NECTIN PATHWAY | Nectin adhesion pathway |
0.0 | 0.6 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
0.0 | 0.5 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 0.5 | ST P38 MAPK PATHWAY | p38 MAPK Pathway |
0.0 | 0.5 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 0.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.9 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |
0.1 | 1.7 | REACTOME CONVERSION FROM APC C CDC20 TO APC C CDH1 IN LATE ANAPHASE | Genes involved in Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase |
0.0 | 1.6 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.1 | 1.3 | REACTOME ACTIVATION OF BH3 ONLY PROTEINS | Genes involved in Activation of BH3-only proteins |
0.1 | 1.2 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
0.1 | 1.2 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |
0.1 | 1.1 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
0.0 | 1.1 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.1 | 1.0 | REACTOME REGULATION OF THE FANCONI ANEMIA PATHWAY | Genes involved in Regulation of the Fanconi anemia pathway |
0.1 | 1.0 | REACTOME MEMBRANE BINDING AND TARGETTING OF GAG PROTEINS | Genes involved in Membrane binding and targetting of GAG proteins |