PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000001910 | RAR-related orphan receptor A, paralog b | |
ENSDARG00000031768 | RAR-related orphan receptor A, paralog a | |
ENSDARG00000109324 | RAR-related orphan receptor A, paralog b | |
ENSDARG00000113275 | RAR-related orphan receptor A, paralog b |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
rorab | dr11_v1_chr7_-_29571615_29571615 | 0.64 | 3.2e-03 | Click! |
roraa | dr11_v1_chr25_+_33849647_33849647 | 0.60 | 6.8e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_11385155 Show fit | 2.69 |
ENSDART00000064214
|
placenta-specific 8, tandem duplicate 1 |
|
chr19_+_40856534 Show fit | 2.04 |
ENSDART00000051950
|
guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 |
|
chr13_+_50375800 Show fit | 2.03 |
ENSDART00000099537
|
cytochrome c oxidase subunit Vb 2 |
|
chr19_+_40856807 Show fit | 1.89 |
ENSDART00000139083
|
guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 |
|
chr15_+_19797918 Show fit | 1.66 |
ENSDART00000113314
|
si:ch211-229d2.5 |
|
chr25_+_3326885 Show fit | 1.55 |
ENSDART00000104866
|
lactate dehydrogenase Bb |
|
chr15_-_12270857 Show fit | 1.53 |
ENSDART00000170093
|
si:dkey-36i7.3 |
|
chr1_-_50859053 Show fit | 1.40 |
ENSDART00000132779
ENSDART00000137648 |
si:dkeyp-123h10.2 |
|
chr11_+_30729745 Show fit | 1.39 |
ENSDART00000103270
|
solute carrier family 22 (organic anion transporter), member 7a |
|
chr6_-_35439406 Show fit | 1.37 |
ENSDART00000073784
|
regulator of G protein signaling 5a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.0 | GO:0006123 | mitochondrial electron transport, cytochrome c to oxygen(GO:0006123) |
0.0 | 1.9 | GO:1902600 | hydrogen ion transmembrane transport(GO:1902600) |
0.4 | 1.8 | GO:0019242 | methylglyoxal biosynthetic process(GO:0019242) glyceraldehyde-3-phosphate biosynthetic process(GO:0046166) |
0.0 | 1.2 | GO:0007212 | dopamine receptor signaling pathway(GO:0007212) |
0.2 | 1.1 | GO:0035176 | mammillary body development(GO:0021767) social behavior(GO:0035176) intraspecies interaction between organisms(GO:0051703) |
0.0 | 1.1 | GO:0035249 | synaptic transmission, glutamatergic(GO:0035249) |
0.1 | 1.0 | GO:0006735 | glucose catabolic process(GO:0006007) NADH regeneration(GO:0006735) glycolytic process through fructose-6-phosphate(GO:0061615) glycolytic process through glucose-6-phosphate(GO:0061620) canonical glycolysis(GO:0061621) glucose catabolic process to pyruvate(GO:0061718) |
0.0 | 1.0 | GO:0035622 | intrahepatic bile duct development(GO:0035622) |
0.0 | 1.0 | GO:0007338 | single fertilization(GO:0007338) |
0.2 | 0.8 | GO:0060986 | regulation of endocrine process(GO:0044060) positive regulation of circadian sleep/wake cycle, sleep(GO:0045938) endocrine hormone secretion(GO:0060986) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.9 | GO:0031680 | G-protein beta/gamma-subunit complex(GO:0031680) |
0.0 | 1.7 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.2 | 1.3 | GO:0033181 | plasma membrane proton-transporting V-type ATPase complex(GO:0033181) |
0.1 | 1.0 | GO:0005945 | 6-phosphofructokinase complex(GO:0005945) |
0.0 | 0.8 | GO:0033017 | sarcoplasmic reticulum membrane(GO:0033017) |
0.1 | 0.7 | GO:0045275 | mitochondrial respiratory chain complex III(GO:0005750) respiratory chain complex III(GO:0045275) |
0.0 | 0.7 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 0.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.1 | 0.6 | GO:0005890 | sodium:potassium-exchanging ATPase complex(GO:0005890) cation-transporting ATPase complex(GO:0090533) |
0.0 | 0.6 | GO:0005605 | basal lamina(GO:0005605) laminin complex(GO:0043256) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.9 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
0.4 | 2.6 | GO:0004459 | L-lactate dehydrogenase activity(GO:0004459) |
0.0 | 2.3 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.1 | 2.0 | GO:0015002 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
0.4 | 1.8 | GO:0004807 | triose-phosphate isomerase activity(GO:0004807) methylglyoxal synthase activity(GO:0008929) |
0.3 | 1.7 | GO:0051430 | mu-type opioid receptor binding(GO:0031852) corticotropin-releasing hormone receptor 1 binding(GO:0051430) |
0.3 | 1.0 | GO:0055105 | ubiquitin-protein transferase inhibitor activity(GO:0055105) |
0.1 | 1.0 | GO:0003872 | 6-phosphofructokinase activity(GO:0003872) |
0.0 | 1.0 | GO:1904315 | neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential(GO:0099529) transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential(GO:1904315) |
0.0 | 0.9 | GO:0098632 | protein binding involved in cell-cell adhesion(GO:0098632) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.3 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.0 | 1.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.7 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.0 | 0.6 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.0 | 0.5 | PID ARF6 TRAFFICKING PATHWAY | Arf6 trafficking events |
0.0 | 0.3 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 0.2 | ST GA12 PATHWAY | G alpha 12 Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 3.9 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |
0.1 | 1.2 | REACTOME ACTIVATED AMPK STIMULATES FATTY ACID OXIDATION IN MUSCLE | Genes involved in Activated AMPK stimulates fatty-acid oxidation in muscle |
0.1 | 0.6 | REACTOME PURINE CATABOLISM | Genes involved in Purine catabolism |
0.0 | 0.6 | REACTOME PROSTACYCLIN SIGNALLING THROUGH PROSTACYCLIN RECEPTOR | Genes involved in Prostacyclin signalling through prostacyclin receptor |
0.0 | 0.6 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 0.5 | REACTOME TRANSFERRIN ENDOCYTOSIS AND RECYCLING | Genes involved in Transferrin endocytosis and recycling |
0.0 | 0.5 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.0 | 0.5 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |
0.0 | 0.5 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
0.0 | 0.4 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |