PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
rreb1a | dr11_v1_chr24_-_2450597_2450597 | 0.39 | 1.0e-01 | Click! |
rreb1b | dr11_v1_chr2_+_21048661_21048661 | 0.32 | 1.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_+_828663 Show fit | 11.25 |
ENSDART00000181776
|
|
|
chr5_+_817016 Show fit | 11.25 |
ENSDART00000188498
|
|
|
chr13_-_638485 Show fit | 6.54 |
ENSDART00000066080
ENSDART00000128969 |
slit homolog 1a (Drosophila) |
|
chr2_-_22535 Show fit | 6.24 |
ENSDART00000157877
|
|
|
chr7_-_10606 Show fit | 4.26 |
ENSDART00000192650
ENSDART00000186761 |
|
|
chr9_+_51882534 Show fit | 4.09 |
ENSDART00000165493
|
|
|
chr4_+_90048 Show fit | 3.98 |
ENSDART00000166440
|
low density lipoprotein receptor-related protein 6 |
|
chr20_+_52595220 Show fit | 3.62 |
ENSDART00000180610
|
si:dkey-235d18.5 |
|
chr24_-_38110779 Show fit | 3.61 |
ENSDART00000147783
|
c-reactive protein, pentraxin-related |
|
chr7_-_57949117 Show fit | 3.52 |
ENSDART00000138803
|
ankyrin 2b, neuronal |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.0 | GO:0007160 | cell-matrix adhesion(GO:0007160) |
0.3 | 6.5 | GO:0045773 | positive regulation of axon extension(GO:0045773) |
0.2 | 4.2 | GO:0044332 | Wnt signaling pathway involved in dorsal/ventral axis specification(GO:0044332) |
0.7 | 3.5 | GO:0036371 | protein localization to T-tubule(GO:0036371) |
0.2 | 3.1 | GO:0021754 | facial nucleus development(GO:0021754) |
0.0 | 2.8 | GO:0006813 | potassium ion transport(GO:0006813) |
0.1 | 2.7 | GO:0042738 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.0 | 2.6 | GO:0014065 | phosphatidylinositol 3-kinase signaling(GO:0014065) |
0.0 | 2.5 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.1 | 2.4 | GO:0014059 | dopamine secretion(GO:0014046) regulation of dopamine secretion(GO:0014059) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.3 | GO:0032587 | ruffle membrane(GO:0032587) |
0.0 | 4.2 | GO:0005871 | kinesin complex(GO:0005871) |
0.0 | 4.1 | GO:0030424 | axon(GO:0030424) |
0.1 | 3.7 | GO:0042641 | actomyosin(GO:0042641) |
0.2 | 3.5 | GO:0030315 | T-tubule(GO:0030315) |
0.1 | 3.0 | GO:0008305 | integrin complex(GO:0008305) |
0.0 | 2.9 | GO:0031902 | late endosome membrane(GO:0031902) |
0.0 | 2.8 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.1 | 2.7 | GO:0033017 | sarcoplasmic reticulum membrane(GO:0033017) |
0.0 | 2.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 7.6 | GO:0048495 | Roundabout binding(GO:0048495) |
0.3 | 4.2 | GO:0042813 | Wnt-activated receptor activity(GO:0042813) |
0.0 | 4.0 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.1 | 3.7 | GO:0015485 | cholesterol binding(GO:0015485) |
0.2 | 3.5 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) aspartic-type peptidase activity(GO:0070001) |
0.2 | 3.1 | GO:0008093 | cytoskeletal adaptor activity(GO:0008093) |
0.2 | 2.7 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
0.0 | 2.7 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.1 | 2.5 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.0 | 2.5 | GO:0003777 | microtubule motor activity(GO:0003777) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.9 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.1 | 3.3 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.1 | 1.6 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.0 | 1.5 | PID FANCONI PATHWAY | Fanconi anemia pathway |
0.1 | 1.4 | PID CD40 PATHWAY | CD40/CD40L signaling |
0.0 | 1.4 | PID P73PATHWAY | p73 transcription factor network |
0.0 | 1.4 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 1.2 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.1 | 0.9 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
0.0 | 0.9 | PID CDC42 PATHWAY | CDC42 signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 3.6 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.2 | 3.1 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.1 | 2.2 | REACTOME EFFECTS OF PIP2 HYDROLYSIS | Genes involved in Effects of PIP2 hydrolysis |
0.0 | 1.8 | REACTOME INTEGRIN CELL SURFACE INTERACTIONS | Genes involved in Integrin cell surface interactions |
0.0 | 1.7 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.0 | 1.7 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.1 | 1.6 | REACTOME SOS MEDIATED SIGNALLING | Genes involved in SOS-mediated signalling |
0.1 | 1.5 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
0.0 | 1.4 | REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING | Genes involved in Negative regulators of RIG-I/MDA5 signaling |
0.0 | 1.3 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |