PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
runx1 | dr11_v1_chr1_-_1402303_1402303 | -0.26 | 2.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_+_77973876 Show fit | 3.60 |
ENSDART00000057423
|
telomeric repeat binding factor a |
|
chr7_-_17337233 Show fit | 3.17 |
ENSDART00000050236
ENSDART00000102141 |
novel immune-type receptor 8 |
|
chr20_+_98179 Show fit | 3.11 |
ENSDART00000022725
|
si:ch1073-155h21.1 |
|
chr3_+_28576173 Show fit | 2.69 |
ENSDART00000151189
|
septin 12 |
|
chr24_-_21921262 Show fit | 2.47 |
ENSDART00000186061
ENSDART00000187846 |
transgelin 3b |
|
chr13_-_39947335 Show fit | 2.32 |
ENSDART00000056996
|
secreted frizzled-related protein 5 |
|
chr3_-_19367081 Show fit | 2.30 |
ENSDART00000191369
|
sphingosine-1-phosphate receptor 5a |
|
chr24_+_13635108 Show fit | 2.29 |
ENSDART00000183008
|
transient receptor potential cation channel, subfamily A, member 1b |
|
chr13_-_6081803 Show fit | 2.27 |
ENSDART00000099224
|
deltaD |
|
chr20_+_14941264 Show fit | 2.13 |
ENSDART00000080224
|
inosine triphosphatase (nucleoside triphosphate pyrophosphatase) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.7 | GO:0006397 | mRNA processing(GO:0006397) |
0.1 | 5.9 | GO:0010466 | negative regulation of peptidase activity(GO:0010466) |
0.0 | 5.6 | GO:0006470 | protein dephosphorylation(GO:0006470) |
0.0 | 4.2 | GO:0061640 | cytoskeleton-dependent cytokinesis(GO:0061640) |
0.9 | 3.6 | GO:0032208 | regulation of telomere maintenance via recombination(GO:0032207) negative regulation of telomere maintenance via recombination(GO:0032208) |
0.1 | 3.6 | GO:0071427 | mRNA export from nucleus(GO:0006406) mRNA-containing ribonucleoprotein complex export from nucleus(GO:0071427) |
0.2 | 3.4 | GO:0061055 | myotome development(GO:0061055) |
0.2 | 3.2 | GO:0044818 | mitotic G2/M transition checkpoint(GO:0044818) |
0.3 | 3.1 | GO:0045003 | double-strand break repair via synthesis-dependent strand annealing(GO:0045003) |
0.0 | 3.1 | GO:0007189 | adenylate cyclase-activating G-protein coupled receptor signaling pathway(GO:0007189) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.9 | GO:0005730 | nucleolus(GO:0005730) |
0.3 | 5.7 | GO:0000784 | telomere cap complex(GO:0000782) nuclear telomere cap complex(GO:0000783) nuclear chromosome, telomeric region(GO:0000784) |
0.1 | 4.2 | GO:0031105 | septin ring(GO:0005940) septin complex(GO:0031105) septin cytoskeleton(GO:0032156) |
0.0 | 4.2 | GO:0016607 | nuclear speck(GO:0016607) |
0.0 | 3.9 | GO:0005923 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.0 | 3.6 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
0.0 | 3.2 | GO:0005604 | basement membrane(GO:0005604) |
0.4 | 2.4 | GO:0070876 | SOSS complex(GO:0070876) |
0.5 | 2.3 | GO:0070390 | transcription export complex 2(GO:0070390) |
0.7 | 2.1 | GO:0034709 | methylosome(GO:0034709) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 24.9 | GO:1990837 | sequence-specific double-stranded DNA binding(GO:1990837) |
0.0 | 11.7 | GO:0003723 | RNA binding(GO:0003723) |
0.0 | 7.4 | GO:0003924 | GTPase activity(GO:0003924) |
0.7 | 5.4 | GO:0098505 | G-rich strand telomeric DNA binding(GO:0098505) |
0.0 | 4.4 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
0.4 | 4.1 | GO:0000400 | four-way junction DNA binding(GO:0000400) |
0.0 | 4.0 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
0.1 | 3.9 | GO:0003697 | single-stranded DNA binding(GO:0003697) |
0.0 | 3.9 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.0 | 3.7 | GO:0001594 | trace-amine receptor activity(GO:0001594) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.2 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.1 | 4.8 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.1 | 3.3 | PID FANCONI PATHWAY | Fanconi anemia pathway |
0.1 | 2.7 | PID MYC PATHWAY | C-MYC pathway |
0.2 | 2.5 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.1 | 2.3 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
0.1 | 2.3 | PID HEDGEHOG GLI PATHWAY | Hedgehog signaling events mediated by Gli proteins |
0.0 | 2.2 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
0.1 | 2.1 | PID ATR PATHWAY | ATR signaling pathway |
0.1 | 1.9 | PID ERBB1 RECEPTOR PROXIMAL PATHWAY | EGF receptor (ErbB1) signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.5 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
0.3 | 3.1 | REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS | Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs |
0.0 | 2.8 | REACTOME CLASS I MHC MEDIATED ANTIGEN PROCESSING PRESENTATION | Genes involved in Class I MHC mediated antigen processing & presentation |
0.3 | 2.5 | REACTOME EARLY PHASE OF HIV LIFE CYCLE | Genes involved in Early Phase of HIV Life Cycle |
0.2 | 2.4 | REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX | Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex |
0.1 | 2.4 | REACTOME REGULATION OF ORNITHINE DECARBOXYLASE ODC | Genes involved in Regulation of ornithine decarboxylase (ODC) |
0.0 | 2.2 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.1 | 2.0 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.1 | 2.0 | REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS | Genes involved in Transport of Ribonucleoproteins into the Host Nucleus |
0.1 | 1.9 | REACTOME APC CDC20 MEDIATED DEGRADATION OF NEK2A | Genes involved in APC-Cdc20 mediated degradation of Nek2A |