PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
runx2a | dr11_v1_chr17_+_5351922_5351922 | -0.22 | 3.7e-01 | Click! |
runx2b | dr11_v1_chr20_-_44055095_44055123 | -0.15 | 5.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr23_-_6641223 Show fit | 2.95 |
ENSDART00000023793
|
major intrinsic protein of lens fiber b |
|
chr10_-_25769334 Show fit | 2.83 |
ENSDART00000134176
|
periostin, osteoblast specific factor a |
|
chr9_-_22205682 Show fit | 2.67 |
ENSDART00000101869
|
crystallin, gamma M2d12 |
|
chr11_+_25481046 Show fit | 2.63 |
ENSDART00000065940
|
opsin 1 (cone pigments), long-wave-sensitive, 2 |
|
chr21_+_7582036 Show fit | 2.53 |
ENSDART00000135485
ENSDART00000027268 |
orthopedia homeobox a |
|
chr20_-_14054083 Show fit | 2.50 |
ENSDART00000009549
|
Rh associated glycoprotein |
|
chr23_+_3538463 Show fit | 2.34 |
ENSDART00000172758
|
si:dkey-9l20.3 |
|
chr7_+_34231782 Show fit | 2.17 |
ENSDART00000173547
|
lactase-like a |
|
chr7_+_25858380 Show fit | 1.94 |
ENSDART00000148780
ENSDART00000079218 |
myotubularin related protein 1a |
|
chr8_+_25173317 Show fit | 1.91 |
ENSDART00000142006
|
G protein-coupled receptor 61 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.2 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.3 | 3.0 | GO:0006833 | water transport(GO:0006833) |
0.1 | 2.9 | GO:0018298 | protein-chromophore linkage(GO:0018298) |
0.5 | 2.7 | GO:0035176 | social behavior(GO:0035176) intraspecies interaction between organisms(GO:0051703) |
0.6 | 2.5 | GO:0015840 | urea transport(GO:0015840) |
0.0 | 2.5 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.2 | 2.3 | GO:0030210 | heparin metabolic process(GO:0030202) heparin biosynthetic process(GO:0030210) |
0.0 | 2.3 | GO:0045214 | sarcomere organization(GO:0045214) |
0.0 | 2.1 | GO:0007160 | cell-matrix adhesion(GO:0007160) |
0.3 | 1.9 | GO:0034389 | lipid particle organization(GO:0034389) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.8 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.0 | 1.9 | GO:0005942 | phosphatidylinositol 3-kinase complex(GO:0005942) |
0.0 | 1.8 | GO:0005861 | troponin complex(GO:0005861) |
0.2 | 1.5 | GO:0070938 | contractile ring(GO:0070938) |
0.1 | 1.4 | GO:0048179 | activin receptor complex(GO:0048179) |
0.1 | 1.4 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
0.2 | 1.3 | GO:0030121 | AP-1 adaptor complex(GO:0030121) |
0.1 | 1.2 | GO:0034361 | very-low-density lipoprotein particle(GO:0034361) |
0.1 | 1.2 | GO:0031680 | G-protein beta/gamma-subunit complex(GO:0031680) |
0.0 | 1.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.1 | GO:0008519 | ammonium transmembrane transporter activity(GO:0008519) |
0.3 | 3.0 | GO:0015250 | water channel activity(GO:0015250) |
0.0 | 2.9 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 2.8 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
0.0 | 2.5 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.6 | 2.3 | GO:0047464 | heparosan-N-sulfate-glucuronate 5-epimerase activity(GO:0047464) |
0.2 | 2.2 | GO:0008422 | beta-glucosidase activity(GO:0008422) |
0.2 | 1.9 | GO:0052629 | phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629) |
0.1 | 1.9 | GO:0099529 | neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential(GO:0099529) transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential(GO:1904315) |
0.1 | 1.9 | GO:0046935 | 1-phosphatidylinositol-3-kinase regulator activity(GO:0046935) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.1 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 2.1 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
0.1 | 1.7 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 1.2 | PID REELIN PATHWAY | Reelin signaling pathway |
0.1 | 1.2 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.0 | 0.8 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
0.0 | 0.7 | PID MYC PATHWAY | C-MYC pathway |
0.0 | 0.7 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.0 | 0.6 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.1 | 0.5 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.5 | REACTOME AMINE COMPOUND SLC TRANSPORTERS | Genes involved in Amine compound SLC transporters |
0.2 | 1.8 | REACTOME KERATAN SULFATE DEGRADATION | Genes involved in Keratan sulfate degradation |
0.1 | 1.3 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |
0.3 | 1.2 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |
0.1 | 1.2 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.0 | 1.2 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.0 | 1.1 | REACTOME INTEGRIN CELL SURFACE INTERACTIONS | Genes involved in Integrin cell surface interactions |
0.0 | 1.0 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.1 | 0.9 | REACTOME HIGHLY CALCIUM PERMEABLE POSTSYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Highly calcium permeable postsynaptic nicotinic acetylcholine receptors |
0.1 | 0.9 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |