PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
rx3 | dr11_v1_chr21_+_10756154_10756154 | 0.14 | 5.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr25_-_10503043 Show fit | 2.24 |
ENSDART00000155404
|
cytochrome c oxidase subunit 8b |
|
chr11_+_30244356 Show fit | 2.23 |
ENSDART00000036050
ENSDART00000150080 |
retinoschisin 1a |
|
chr19_+_10339538 Show fit | 1.82 |
ENSDART00000151808
ENSDART00000151235 |
recoverin 3 |
|
chr5_-_50992690 Show fit | 1.75 |
ENSDART00000149553
ENSDART00000097460 ENSDART00000192021 |
3-hydroxy-3-methylglutaryl-CoA reductase a |
|
chr20_-_40755614 Show fit | 1.58 |
ENSDART00000061247
|
connexin 32.3 |
|
chr3_-_50443607 Show fit | 1.47 |
ENSDART00000074036
|
recoverin a |
|
chr10_-_7756865 Show fit | 1.46 |
ENSDART00000114373
ENSDART00000125407 ENSDART00000016317 |
lysyl oxidase a |
|
chr2_+_39021282 Show fit | 1.41 |
ENSDART00000056577
|
si:ch211-119o8.7 |
|
chr13_+_28701233 Show fit | 1.33 |
ENSDART00000135931
|
si:ch211-67n3.9 |
|
chr14_-_2933185 Show fit | 1.29 |
ENSDART00000161677
ENSDART00000162446 ENSDART00000109378 |
si:dkey-201i24.6 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 3.3 | GO:0036368 | cone photoresponse recovery(GO:0036368) |
0.0 | 3.0 | GO:0007601 | visual perception(GO:0007601) |
0.0 | 2.2 | GO:0006119 | oxidative phosphorylation(GO:0006119) |
0.1 | 1.7 | GO:0015936 | coenzyme A metabolic process(GO:0015936) |
0.1 | 1.5 | GO:0018057 | peptidyl-lysine oxidation(GO:0018057) |
0.1 | 1.3 | GO:0008535 | respiratory chain complex IV assembly(GO:0008535) |
0.2 | 1.2 | GO:0070208 | protein heterotrimerization(GO:0070208) |
0.1 | 1.2 | GO:0061075 | positive regulation of neural retina development(GO:0061075) positive regulation of retina development in camera-type eye(GO:1902868) |
0.0 | 1.1 | GO:0007218 | neuropeptide signaling pathway(GO:0007218) |
0.1 | 0.7 | GO:0034063 | stress granule assembly(GO:0034063) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.2 | GO:0045277 | respiratory chain complex IV(GO:0045277) |
0.2 | 2.0 | GO:0033165 | interphotoreceptor matrix(GO:0033165) |
0.0 | 1.7 | GO:0005778 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.0 | 1.2 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.1 | 0.6 | GO:0042584 | chromaffin granule membrane(GO:0042584) |
0.0 | 0.6 | GO:0043679 | axon terminus(GO:0043679) |
0.0 | 0.5 | GO:0042627 | chylomicron(GO:0042627) |
0.0 | 0.5 | GO:0032420 | stereocilium(GO:0032420) |
0.0 | 0.5 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
0.0 | 0.5 | GO:0000421 | autophagosome membrane(GO:0000421) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.2 | GO:0016676 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
0.1 | 2.0 | GO:0005540 | hyaluronic acid binding(GO:0005540) |
0.1 | 1.5 | GO:0004720 | protein-lysine 6-oxidase activity(GO:0004720) |
0.0 | 1.3 | GO:0050661 | NADP binding(GO:0050661) |
0.1 | 1.2 | GO:0022851 | benzodiazepine receptor activity(GO:0008503) GABA-gated chloride ion channel activity(GO:0022851) |
0.1 | 0.9 | GO:0008048 | calcium sensitive guanylate cyclase activator activity(GO:0008048) |
0.0 | 0.8 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
0.0 | 0.7 | GO:0050291 | sphingosine N-acyltransferase activity(GO:0050291) |
0.1 | 0.6 | GO:0070330 | aromatase activity(GO:0070330) |
0.0 | 0.6 | GO:0031628 | opioid receptor binding(GO:0031628) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.0 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.0 | 0.5 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 0.3 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.0 | 0.7 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
0.1 | 0.5 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
0.0 | 0.3 | REACTOME SEMA3A PAK DEPENDENT AXON REPULSION | Genes involved in Sema3A PAK dependent Axon repulsion |