PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
rxrba | dr11_v1_chr19_-_7274844_7274844 | 0.92 | 1.7e-08 | Click! |
rxraa | dr11_v1_chr21_+_17880511_17880511 | 0.86 | 2.8e-06 | Click! |
rxrab | dr11_v1_chr5_-_64511428_64511428 | 0.66 | 2.2e-03 | Click! |
rxrgb | dr11_v1_chr20_+_33875256_33875256 | -0.05 | 8.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_-_29996344 Show fit | 4.58 |
ENSDART00000003712
ENSDART00000126110 |
angiotensin I converting enzyme 2 |
|
chr17_+_450956 Show fit | 4.53 |
ENSDART00000183022
ENSDART00000171386 |
zgc:194887 |
|
chr10_+_45128375 Show fit | 4.03 |
ENSDART00000164805
|
calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 2 |
|
chr24_-_29586082 Show fit | 3.58 |
ENSDART00000136763
|
vav 3 guanine nucleotide exchange factor a |
|
chr20_-_25522911 Show fit | 3.52 |
ENSDART00000063058
|
cytochrome P450, family 2, subfamily N, polypeptide 13 |
|
chr23_-_45504991 Show fit | 3.49 |
ENSDART00000148761
|
collagen type XXIV alpha 1 |
|
chr19_-_20093341 Show fit | 3.29 |
ENSDART00000129917
|
membrane protein, palmitoylated 6b (MAGUK p55 subfamily member 6) |
|
chr8_-_37263524 Show fit | 3.26 |
ENSDART00000061327
|
Rh50-like protein |
|
chr15_+_47386939 Show fit | 3.19 |
ENSDART00000128224
|
|
|
chr2_-_57076687 Show fit | 3.16 |
ENSDART00000161523
|
solute carrier family 25, member 42 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 9.6 | GO:0042737 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.2 | 4.3 | GO:0031114 | regulation of microtubule depolymerization(GO:0031114) |
0.1 | 4.0 | GO:0035118 | embryonic pectoral fin morphogenesis(GO:0035118) |
0.0 | 3.9 | GO:0021782 | glial cell development(GO:0021782) |
0.2 | 3.6 | GO:0050910 | detection of mechanical stimulus involved in sensory perception of sound(GO:0050910) |
0.6 | 3.5 | GO:0038063 | collagen-activated tyrosine kinase receptor signaling pathway(GO:0038063) collagen-activated signaling pathway(GO:0038065) |
0.4 | 3.3 | GO:0072488 | ammonium transmembrane transport(GO:0072488) |
1.1 | 3.2 | GO:0009750 | response to fructose(GO:0009750) |
0.1 | 3.0 | GO:0006171 | cAMP biosynthetic process(GO:0006171) |
0.0 | 2.9 | GO:0006334 | nucleosome assembly(GO:0006334) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.6 | GO:0008287 | protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293) |
1.2 | 3.5 | GO:0005592 | collagen type XI trimer(GO:0005592) |
0.0 | 3.3 | GO:0043025 | neuronal cell body(GO:0043025) |
0.0 | 2.9 | GO:0000786 | nucleosome(GO:0000786) |
0.4 | 2.8 | GO:0005790 | smooth endoplasmic reticulum(GO:0005790) |
0.9 | 2.6 | GO:0005948 | acetolactate synthase complex(GO:0005948) |
0.0 | 2.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.0 | 2.4 | GO:0005795 | Golgi stack(GO:0005795) |
0.0 | 2.2 | GO:0032432 | actin filament bundle(GO:0032432) |
0.1 | 2.1 | GO:0016581 | NuRD complex(GO:0016581) CHD-type complex(GO:0090545) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 11.1 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.0 | 5.6 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.1 | 4.2 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.1 | 4.1 | GO:0004180 | carboxypeptidase activity(GO:0004180) |
0.1 | 4.0 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
0.1 | 3.9 | GO:0019200 | carbohydrate kinase activity(GO:0019200) |
0.0 | 3.8 | GO:0008017 | microtubule binding(GO:0008017) |
0.2 | 3.6 | GO:0005504 | fatty acid binding(GO:0005504) |
0.1 | 3.3 | GO:0008519 | ammonium transmembrane transporter activity(GO:0008519) |
1.1 | 3.2 | GO:0080122 | coenzyme A transmembrane transporter activity(GO:0015228) adenosine 3',5'-bisphosphate transmembrane transporter activity(GO:0071077) AMP transmembrane transporter activity(GO:0080122) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | NABA COLLAGENS | Genes encoding collagen proteins |
0.1 | 2.3 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.0 | 2.1 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.0 | 2.1 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.1 | 1.9 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.0 | 1.9 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 1.1 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.1 | 0.9 | PID S1P S1P4 PATHWAY | S1P4 pathway |
0.0 | 0.9 | PID ATM PATHWAY | ATM pathway |
0.0 | 0.6 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.2 | 3.3 | REACTOME SYNTHESIS OF PC | Genes involved in Synthesis of PC |
0.0 | 2.7 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.1 | 1.7 | REACTOME PLATELET SENSITIZATION BY LDL | Genes involved in Platelet sensitization by LDL |
0.5 | 1.4 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
0.1 | 1.4 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |
0.0 | 1.3 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.1 | 1.2 | REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX | Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex |
0.0 | 1.1 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.0 | 1.1 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |