PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
six4b | dr11_v1_chr20_+_20484827_20484827 | -0.90 | 1.2e-07 | Click! |
six4a | dr11_v1_chr13_-_31647323_31647323 | -0.83 | 9.6e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_28971002 Show fit | 4.63 |
ENSDART00000153159
|
si:rp71-1c10.11 |
|
chr2_+_10134345 Show fit | 3.76 |
ENSDART00000100725
|
alpha-2-HS-glycoprotein 2 |
|
chr5_+_37837245 Show fit | 3.60 |
ENSDART00000171617
|
ependymin |
|
chr8_-_25329967 Show fit | 3.10 |
ENSDART00000139682
|
EPS8-like 3b |
|
chr3_-_40955780 Show fit | 2.97 |
ENSDART00000130130
|
cytochrome P450, family 3, subfamily c, polypeptide 3 |
|
chr5_+_13472234 Show fit | 2.51 |
ENSDART00000114069
ENSDART00000132406 |
cyclin and CBS domain divalent metal cation transport mediator 4b |
|
chr2_-_4797512 Show fit | 2.12 |
ENSDART00000160765
|
tyrosine kinase, non-receptor, 2b |
|
chr11_+_40649412 Show fit | 2.11 |
ENSDART00000043016
ENSDART00000134560 |
solute carrier family 45, member 1 |
|
chr1_+_37752171 Show fit | 2.06 |
ENSDART00000183247
ENSDART00000189756 ENSDART00000139448 |
si:ch211-15e22.3 |
|
chr16_-_13818061 Show fit | 2.01 |
ENSDART00000132982
ENSDART00000144856 |
leukocyte receptor cluster (LRC) member 9 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.8 | GO:0010951 | negative regulation of endopeptidase activity(GO:0010951) |
0.0 | 3.6 | GO:0007160 | cell-matrix adhesion(GO:0007160) |
0.5 | 3.1 | GO:1900029 | positive regulation of ruffle assembly(GO:1900029) |
0.2 | 2.5 | GO:0010960 | magnesium ion homeostasis(GO:0010960) |
0.1 | 1.7 | GO:0014823 | response to activity(GO:0014823) |
0.2 | 1.5 | GO:2000312 | regulation of kainate selective glutamate receptor activity(GO:2000312) |
0.1 | 1.5 | GO:0098962 | regulation of postsynaptic neurotransmitter receptor activity(GO:0098962) |
0.0 | 1.4 | GO:0051260 | protein homooligomerization(GO:0051260) |
0.1 | 1.3 | GO:0036368 | cone photoresponse recovery(GO:0036368) |
0.0 | 1.3 | GO:1902476 | chloride transmembrane transport(GO:1902476) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.6 | GO:0005764 | lysosome(GO:0005764) |
0.1 | 3.1 | GO:0032587 | ruffle membrane(GO:0032587) |
0.0 | 2.6 | GO:0005811 | lipid particle(GO:0005811) |
0.0 | 2.1 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
0.0 | 1.7 | GO:0008076 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
0.0 | 1.5 | GO:0098978 | glutamatergic synapse(GO:0098978) |
0.0 | 1.3 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 1.3 | GO:0072686 | mitotic spindle(GO:0072686) |
0.0 | 0.9 | GO:0002116 | semaphorin receptor complex(GO:0002116) |
0.1 | 0.8 | GO:0030315 | T-tubule(GO:0030315) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.8 | GO:0004869 | cysteine-type endopeptidase inhibitor activity(GO:0004869) |
0.0 | 3.4 | GO:0008395 | steroid hydroxylase activity(GO:0008395) |
0.0 | 2.6 | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0016616) |
0.2 | 2.4 | GO:0004046 | aminoacylase activity(GO:0004046) |
0.1 | 2.3 | GO:0015095 | magnesium ion transmembrane transporter activity(GO:0015095) |
0.1 | 2.3 | GO:0004712 | protein serine/threonine/tyrosine kinase activity(GO:0004712) |
0.3 | 2.1 | GO:0005402 | sugar:proton symporter activity(GO:0005351) cation:sugar symporter activity(GO:0005402) sucrose:proton symporter activity(GO:0008506) sucrose transmembrane transporter activity(GO:0008515) disaccharide transmembrane transporter activity(GO:0015154) oligosaccharide transmembrane transporter activity(GO:0015157) |
0.1 | 1.7 | GO:0005344 | oxygen transporter activity(GO:0005344) oxygen binding(GO:0019825) |
0.0 | 1.3 | GO:0004890 | GABA-A receptor activity(GO:0004890) |
0.1 | 1.2 | GO:0015347 | sodium-independent organic anion transmembrane transporter activity(GO:0015347) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | ST G ALPHA I PATHWAY | G alpha i Pathway |
0.0 | 0.9 | PID SHP2 PATHWAY | SHP2 signaling |
0.0 | 0.6 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
0.0 | 0.5 | PID ERBB1 RECEPTOR PROXIMAL PATHWAY | EGF receptor (ErbB1) signaling pathway |
0.0 | 0.2 | PID TCR RAS PATHWAY | Ras signaling in the CD4+ TCR pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.6 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
0.1 | 2.1 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |
0.2 | 1.6 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.0 | 0.9 | REACTOME FRS2 MEDIATED CASCADE | Genes involved in FRS2-mediated cascade |
0.0 | 0.9 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.1 | 0.8 | REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE | Genes involved in Regulation of Insulin Secretion by Acetylcholine |
0.1 | 0.7 | REACTOME CRMPS IN SEMA3A SIGNALING | Genes involved in CRMPs in Sema3A signaling |
0.0 | 0.7 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.0 | 0.7 | REACTOME SHC MEDIATED SIGNALLING | Genes involved in SHC-mediated signalling |
0.1 | 0.5 | REACTOME PD1 SIGNALING | Genes involved in PD-1 signaling |