PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
six6b | dr11_v1_chr20_-_20533865_20533865 | 0.85 | 3.8e-06 | Click! |
six6a | dr11_v1_chr13_+_31603988_31603988 | 0.71 | 6.1e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22310919 Show fit | 1.43 |
ENSDART00000108719
|
crystallin, gamma M2d10 |
|
chr13_+_35745572 Show fit | 1.06 |
ENSDART00000159690
|
G protein-coupled receptor 75 |
|
chr25_+_31277415 Show fit | 0.98 |
ENSDART00000036275
|
troponin I type 2a (skeletal, fast), tandem duplicate 4 |
|
chr14_+_51098036 Show fit | 0.90 |
ENSDART00000184118
|
|
|
chr17_+_51627209 Show fit | 0.83 |
ENSDART00000056886
|
zgc:113142 |
|
chr3_+_25154078 Show fit | 0.74 |
ENSDART00000156973
|
si:ch211-256m1.8 |
|
chr7_-_31932723 Show fit | 0.53 |
ENSDART00000014843
|
brain-derived neurotrophic factor |
|
chr3_+_50069204 Show fit | 0.52 |
ENSDART00000184243
|
zgc:103625 |
|
chr10_-_25816558 Show fit | 0.51 |
ENSDART00000017240
|
periostin, osteoblast specific factor a |
|
chr10_-_43540196 Show fit | 0.49 |
ENSDART00000170891
|
si:ch73-215f7.1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.0 | 1.0 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.1 | 0.9 | GO:0016540 | protein autoprocessing(GO:0016540) |
0.1 | 0.5 | GO:0070208 | protein heterotrimerization(GO:0070208) |
0.0 | 0.5 | GO:0048672 | positive regulation of collateral sprouting(GO:0048672) |
0.0 | 0.4 | GO:0071542 | dopaminergic neuron differentiation(GO:0071542) |
0.0 | 0.4 | GO:1903670 | regulation of sprouting angiogenesis(GO:1903670) |
0.1 | 0.3 | GO:0060879 | peripheral nervous system myelin formation(GO:0032290) semicircular canal fusion(GO:0060879) |
0.1 | 0.3 | GO:0003322 | pancreatic A cell development(GO:0003322) |
0.0 | 0.3 | GO:0050848 | regulation of calcium-mediated signaling(GO:0050848) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 0.5 | GO:0070449 | elongin complex(GO:0070449) |
0.0 | 0.5 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 0.4 | GO:0043679 | axon terminus(GO:0043679) |
0.0 | 0.2 | GO:0005943 | phosphatidylinositol 3-kinase complex, class IA(GO:0005943) |
0.0 | 0.2 | GO:0043209 | myelin sheath(GO:0043209) |
0.0 | 0.1 | GO:0070743 | interleukin-12 complex(GO:0043514) interleukin-23 complex(GO:0070743) |
0.0 | 0.0 | GO:1990316 | ATG1/ULK1 kinase complex(GO:1990316) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 1.1 | GO:0016493 | C-C chemokine receptor activity(GO:0016493) |
0.1 | 0.7 | GO:0008798 | beta-aspartyl-peptidase activity(GO:0008798) |
0.0 | 0.5 | GO:0005163 | nerve growth factor receptor binding(GO:0005163) neurotrophin receptor binding(GO:0005165) |
0.0 | 0.5 | GO:0022851 | benzodiazepine receptor activity(GO:0008503) GABA-gated chloride ion channel activity(GO:0022851) |
0.1 | 0.4 | GO:1903136 | cuprous ion binding(GO:1903136) |
0.1 | 0.3 | GO:0008427 | calcium-dependent protein kinase inhibitor activity(GO:0008427) calcium-dependent protein kinase regulator activity(GO:0010858) |
0.0 | 0.3 | GO:0004528 | phosphodiesterase I activity(GO:0004528) |
0.0 | 0.3 | GO:0005391 | sodium:potassium-exchanging ATPase activity(GO:0005391) |
0.0 | 0.3 | GO:0043236 | laminin binding(GO:0043236) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.5 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.5 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
0.0 | 0.4 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.0 | 0.2 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 0.2 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
0.0 | 0.1 | PID IGF1 PATHWAY | IGF1 pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.5 | REACTOME KERATAN SULFATE DEGRADATION | Genes involved in Keratan sulfate degradation |
0.0 | 0.5 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.0 | 0.3 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.0 | 0.1 | REACTOME DEFENSINS | Genes involved in Defensins |
0.0 | 0.1 | REACTOME HIGHLY CALCIUM PERMEABLE POSTSYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Highly calcium permeable postsynaptic nicotinic acetylcholine receptors |
0.0 | 0.1 | REACTOME VITAMIN B5 PANTOTHENATE METABOLISM | Genes involved in Vitamin B5 (pantothenate) metabolism |