PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
smad3b | dr11_v1_chr18_+_19772874_19772874 | -0.61 | 5.1e-03 | Click! |
smad3a | dr11_v1_chr7_-_34149263_34149263 | -0.22 | 3.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_+_16949391 Show fit | 3.23 |
ENSDART00000152635
|
zgc:174153 |
|
chr5_+_24305877 Show fit | 3.14 |
ENSDART00000144226
|
cathepsin L, like |
|
chr3_-_58644920 Show fit | 1.61 |
ENSDART00000155953
|
dehydrogenase/reductase (SDR family) member 7Ca |
|
chr21_+_20903244 Show fit | 1.53 |
ENSDART00000186193
|
complement component 7b |
|
chr5_+_22459087 Show fit | 1.49 |
ENSDART00000134781
|
|
|
chr2_-_20599315 Show fit | 1.44 |
ENSDART00000114199
|
si:ch211-267e7.3 |
|
chr12_-_21681509 Show fit | 1.39 |
ENSDART00000112726
|
essential meiotic structure-specific endonuclease 1 |
|
chr8_-_13541514 Show fit | 1.38 |
ENSDART00000063834
|
zgc:86586 |
|
chr4_+_15944245 Show fit | 1.34 |
ENSDART00000134594
|
si:dkey-117n7.3 |
|
chr1_+_47178529 Show fit | 1.10 |
ENSDART00000158432
ENSDART00000074450 ENSDART00000137448 |
MORC family CW-type zinc finger 3b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.8 | GO:0048936 | peripheral nervous system neuron axonogenesis(GO:0048936) |
0.1 | 1.5 | GO:0019835 | cytolysis(GO:0019835) |
0.1 | 1.4 | GO:0031573 | intra-S DNA damage checkpoint(GO:0031573) |
0.2 | 1.1 | GO:0019262 | N-acetylneuraminate catabolic process(GO:0019262) |
0.0 | 1.1 | GO:0000460 | maturation of 5.8S rRNA(GO:0000460) |
0.0 | 1.0 | GO:0046330 | positive regulation of JNK cascade(GO:0046330) |
0.3 | 0.9 | GO:0098543 | detection of biotic stimulus(GO:0009595) detection of bacterium(GO:0016045) detection of other organism(GO:0098543) detection of external biotic stimulus(GO:0098581) |
0.1 | 0.9 | GO:0060005 | reflex(GO:0060004) vestibular reflex(GO:0060005) vestibular receptor cell differentiation(GO:0060114) vestibular receptor cell development(GO:0060118) |
0.1 | 0.9 | GO:1900107 | regulation of nodal signaling pathway(GO:1900107) |
0.1 | 0.8 | GO:0097106 | postsynaptic density organization(GO:0097106) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.8 | GO:0005764 | lysosome(GO:0005764) |
0.1 | 1.5 | GO:0005579 | membrane attack complex(GO:0005579) |
0.2 | 1.4 | GO:0048476 | Holliday junction resolvase complex(GO:0048476) |
0.0 | 1.4 | GO:0005814 | centriole(GO:0005814) |
0.0 | 0.7 | GO:0000780 | condensed nuclear chromosome kinetochore(GO:0000778) condensed nuclear chromosome, centromeric region(GO:0000780) |
0.2 | 0.6 | GO:0000333 | telomerase catalytic core complex(GO:0000333) |
0.1 | 0.6 | GO:0000931 | gamma-tubulin large complex(GO:0000931) gamma-tubulin ring complex(GO:0008274) |
0.0 | 0.6 | GO:0005844 | polysome(GO:0005844) |
0.0 | 0.6 | GO:0032154 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
0.1 | 0.5 | GO:0000812 | Swr1 complex(GO:0000812) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.2 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.0 | 1.3 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.1 | 1.1 | GO:0016857 | racemase and epimerase activity, acting on carbohydrates and derivatives(GO:0016857) |
0.3 | 0.9 | GO:0016019 | peptidoglycan receptor activity(GO:0016019) |
0.0 | 0.9 | GO:0019209 | kinase activator activity(GO:0019209) protein kinase activator activity(GO:0030295) |
0.1 | 0.8 | GO:0000774 | adenyl-nucleotide exchange factor activity(GO:0000774) |
0.2 | 0.7 | GO:0004020 | adenylylsulfate kinase activity(GO:0004020) sulfate adenylyltransferase activity(GO:0004779) sulfate adenylyltransferase (ATP) activity(GO:0004781) |
0.1 | 0.7 | GO:0031708 | endothelin B receptor binding(GO:0031708) |
0.1 | 0.7 | GO:0004046 | aminoacylase activity(GO:0004046) |
0.0 | 0.7 | GO:0004602 | glutathione peroxidase activity(GO:0004602) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
0.0 | 0.9 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 0.9 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 0.7 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 0.7 | PID ENDOTHELIN PATHWAY | Endothelins |
0.0 | 0.3 | PID WNT NONCANONICAL PATHWAY | Noncanonical Wnt signaling pathway |
0.0 | 0.3 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.0 | 0.3 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 0.3 | SIG PIP3 SIGNALING IN B LYMPHOCYTES | Genes related to PIP3 signaling in B lymphocytes |
0.0 | 0.2 | PID IL2 STAT5 PATHWAY | IL2 signaling events mediated by STAT5 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.9 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.0 | 0.7 | REACTOME ACTIVATION OF RAC | Genes involved in Activation of Rac |
0.1 | 0.6 | REACTOME RECRUITMENT OF NUMA TO MITOTIC CENTROSOMES | Genes involved in Recruitment of NuMA to mitotic centrosomes |
0.0 | 0.6 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |
0.0 | 0.6 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.0 | 0.5 | REACTOME RNA POL III CHAIN ELONGATION | Genes involved in RNA Polymerase III Chain Elongation |
0.0 | 0.4 | REACTOME VITAMIN B5 PANTOTHENATE METABOLISM | Genes involved in Vitamin B5 (pantothenate) metabolism |
0.0 | 0.3 | REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS | Genes involved in Synthesis of substrates in N-glycan biosythesis |
0.0 | 0.3 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
0.0 | 0.3 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |