PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000017397 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a | |
ENSDARG00000098919 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
smarcc1b | dr11_v1_chr19_-_19379084_19379084 | -0.27 | 2.6e-01 | Click! |
smarcc1a | dr11_v1_chr16_-_42461263_42461263 | -0.22 | 3.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr15_-_47115787 Show fit | 5.67 |
ENSDART00000192601
|
|
|
chr3_-_4303262 Show fit | 4.16 |
ENSDART00000112819
|
si:dkey-73p2.2 |
|
chr7_+_35068036 Show fit | 3.71 |
ENSDART00000022139
|
zgc:136461 |
|
chr1_-_59252973 Show fit | 3.67 |
ENSDART00000167061
|
si:ch1073-286c18.5 |
|
chr16_+_18974064 Show fit | 3.48 |
ENSDART00000079248
|
solute carrier family 6 (neutral amino acid transporter), member 19b |
|
chr24_-_40009446 Show fit | 3.16 |
ENSDART00000087422
|
amine oxidase, copper containing 1 |
|
chr11_+_24002503 Show fit | 2.62 |
ENSDART00000164702
|
chitinase, acidic.2 |
|
chr19_-_21832441 Show fit | 2.58 |
ENSDART00000151272
ENSDART00000151442 ENSDART00000150168 ENSDART00000148797 ENSDART00000128196 ENSDART00000149259 ENSDART00000052556 ENSDART00000149658 ENSDART00000149639 ENSDART00000148424 |
myelin basic protein a |
|
chr2_-_293793 Show fit | 2.54 |
ENSDART00000082091
|
si:ch73-40a17.3 |
|
chr12_-_30841679 Show fit | 2.51 |
ENSDART00000105594
|
crystallin, gamma MX |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.3 | GO:0018105 | peptidyl-serine phosphorylation(GO:0018105) |
0.0 | 6.5 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.0 | 5.0 | GO:0035725 | sodium ion transmembrane transport(GO:0035725) |
0.6 | 3.2 | GO:0046677 | response to antibiotic(GO:0046677) |
0.0 | 3.0 | GO:0008203 | cholesterol metabolic process(GO:0008203) |
0.2 | 2.6 | GO:0006032 | chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) |
0.0 | 2.6 | GO:0007601 | visual perception(GO:0007601) |
0.1 | 2.5 | GO:0060536 | cartilage morphogenesis(GO:0060536) |
0.2 | 2.4 | GO:0015936 | coenzyme A metabolic process(GO:0015936) |
0.1 | 2.4 | GO:0015701 | bicarbonate transport(GO:0015701) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.7 | GO:0016323 | basolateral plasma membrane(GO:0016323) |
0.0 | 3.2 | GO:0030141 | secretory granule(GO:0030141) |
0.1 | 2.9 | GO:0031941 | filamentous actin(GO:0031941) |
0.1 | 2.8 | GO:0035371 | microtubule plus-end(GO:0035371) |
0.0 | 2.7 | GO:0005802 | trans-Golgi network(GO:0005802) |
0.1 | 2.6 | GO:0043209 | myelin sheath(GO:0043209) |
0.1 | 2.5 | GO:0043195 | terminal bouton(GO:0043195) |
0.1 | 2.3 | GO:0031903 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.1 | 2.1 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 1.9 | GO:0030424 | axon(GO:0030424) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.1 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 6.5 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 6.0 | GO:0015293 | symporter activity(GO:0015293) |
0.0 | 5.6 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.0 | 5.1 | GO:0019905 | syntaxin binding(GO:0019905) |
0.1 | 3.8 | GO:0005540 | hyaluronic acid binding(GO:0005540) |
0.2 | 3.4 | GO:0005452 | inorganic anion exchanger activity(GO:0005452) |
1.1 | 3.2 | GO:0008397 | sterol 12-alpha-hydroxylase activity(GO:0008397) |
0.6 | 3.2 | GO:0008131 | primary amine oxidase activity(GO:0008131) |
0.1 | 3.1 | GO:0051010 | microtubule plus-end binding(GO:0051010) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.1 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.1 | 2.0 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
0.0 | 1.5 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.0 | 1.4 | ST GA13 PATHWAY | G alpha 13 Pathway |
0.0 | 1.3 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
0.1 | 1.1 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.1 | 1.1 | PID EPHRINB REV PATHWAY | Ephrin B reverse signaling |
0.0 | 0.7 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 0.6 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.0 | 0.6 | ST TUMOR NECROSIS FACTOR PATHWAY | Tumor Necrosis Factor Pathway. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.1 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
0.2 | 2.0 | REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE | Genes involved in Regulation of Insulin Secretion by Acetylcholine |
0.4 | 1.8 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 24 HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 24-hydroxycholesterol |
0.0 | 1.7 | REACTOME CLASS A1 RHODOPSIN LIKE RECEPTORS | Genes involved in Class A/1 (Rhodopsin-like receptors) |
0.1 | 1.4 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.1 | 1.4 | REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE | Genes involved in Sema4D induced cell migration and growth-cone collapse |
0.1 | 1.3 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.0 | 1.3 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
0.1 | 1.2 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
0.1 | 1.0 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |