PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
snai1a | dr11_v1_chr11_-_25257595_25257595 | -0.97 | 9.2e-12 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_-_101758 Show fit | 42.67 |
ENSDART00000173015
|
engulfment and cell motility 2 |
|
chr18_+_907266 Show fit | 20.39 |
ENSDART00000171729
|
pyruvate kinase M1/2a |
|
chr9_-_22310919 Show fit | 19.18 |
ENSDART00000108719
|
crystallin, gamma M2d10 |
|
chr2_+_15612755 Show fit | 17.54 |
ENSDART00000003035
|
amylase, alpha 2A (pancreatic) |
|
chr18_-_5781922 Show fit | 16.46 |
ENSDART00000128722
|
si:ch73-167i17.6 |
|
chr19_+_233143 Show fit | 16.21 |
ENSDART00000175273
|
synaptic Ras GTPase activating protein 1a |
|
chr21_+_11468934 Show fit | 16.04 |
ENSDART00000126045
ENSDART00000129744 ENSDART00000102368 |
glutamate receptor, ionotropic, N-methyl D-aspartate 1a |
|
chr19_-_27966526 Show fit | 15.47 |
ENSDART00000141896
|
ubiquitin-conjugating enzyme E2Q family-like 1 |
|
chr23_+_17387325 Show fit | 15.38 |
ENSDART00000083947
|
PTK6 protein tyrosine kinase 6b |
|
chr9_-_44948488 Show fit | 15.12 |
ENSDART00000059228
|
villin 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 106.6 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.4 | 55.2 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.4 | 41.1 | GO:0007270 | neuron-neuron synaptic transmission(GO:0007270) |
0.4 | 41.1 | GO:0006909 | phagocytosis(GO:0006909) |
0.2 | 39.5 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.7 | 36.5 | GO:0006096 | glycolytic process(GO:0006096) |
0.3 | 34.3 | GO:0051260 | protein homooligomerization(GO:0051260) |
0.2 | 33.2 | GO:0007601 | visual perception(GO:0007601) |
0.2 | 29.7 | GO:0030705 | cytoskeleton-dependent intracellular transport(GO:0030705) |
0.4 | 29.1 | GO:1902476 | chloride transmembrane transport(GO:1902476) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 158.7 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.0 | 64.0 | GO:0005576 | extracellular region(GO:0005576) |
0.2 | 61.8 | GO:0043005 | neuron projection(GO:0043005) |
0.0 | 59.1 | GO:0031224 | intrinsic component of membrane(GO:0031224) |
0.2 | 50.4 | GO:0030424 | axon(GO:0030424) |
0.2 | 45.5 | GO:0098793 | presynapse(GO:0098793) |
0.3 | 36.2 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
2.2 | 33.0 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
0.1 | 31.6 | GO:0031012 | extracellular matrix(GO:0031012) |
0.1 | 31.4 | GO:0005764 | lysosome(GO:0005764) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 104.3 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 73.5 | GO:0005509 | calcium ion binding(GO:0005509) |
0.2 | 70.1 | GO:0051015 | actin filament binding(GO:0051015) |
0.3 | 42.5 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.7 | 41.0 | GO:0017124 | SH3 domain binding(GO:0017124) |
0.2 | 34.5 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
1.1 | 33.3 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
0.6 | 32.1 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
0.3 | 32.1 | GO:0015293 | symporter activity(GO:0015293) |
1.5 | 30.5 | GO:0004972 | NMDA glutamate receptor activity(GO:0004972) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 39.9 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.9 | 22.0 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
1.3 | 19.6 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.6 | 19.3 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.2 | 18.9 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.4 | 15.8 | NABA COLLAGENS | Genes encoding collagen proteins |
0.8 | 15.3 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.2 | 11.8 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.5 | 10.0 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.1 | 9.6 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 27.5 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
4.4 | 26.4 | REACTOME DIGESTION OF DIETARY CARBOHYDRATE | Genes involved in Digestion of dietary carbohydrate |
0.5 | 22.6 | REACTOME EXTRACELLULAR MATRIX ORGANIZATION | Genes involved in Extracellular matrix organization |
1.5 | 22.2 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.3 | 22.2 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
2.0 | 20.0 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |
0.4 | 16.4 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.5 | 14.3 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.2 | 13.9 | REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS | Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. |
0.8 | 13.7 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |