PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
snai1b | dr11_v1_chr23_-_2513300_2513300 | 0.38 | 1.1e-01 | Click! |
snai3 | dr11_v1_chr7_+_55112922_55112922 | -0.13 | 5.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr21_-_21465111 Show fit | 2.73 |
ENSDART00000141487
|
nectin cell adhesion molecule 3b |
|
chr19_-_35439237 Show fit | 1.75 |
ENSDART00000145883
|
anillin, actin binding protein |
|
chr14_-_26482096 Show fit | 1.11 |
ENSDART00000187280
|
SMAD family member 5 |
|
chr22_+_22438783 Show fit | 1.01 |
ENSDART00000147825
|
kinesin family member 14 |
|
chr17_-_11151655 Show fit | 1.01 |
ENSDART00000156383
|
|
|
chr7_+_20917966 Show fit | 0.97 |
ENSDART00000129161
|
WD repeat containing, antisense to TP53 |
|
chr6_-_130849 Show fit | 0.96 |
ENSDART00000108710
|
si:zfos-323e3.4 |
|
chr7_-_50367642 Show fit | 0.94 |
ENSDART00000134941
|
protein regulator of cytokinesis 1b |
|
chr13_+_35955562 Show fit | 0.94 |
ENSDART00000137377
|
si:ch211-67f13.7 |
|
chr3_+_14641962 Show fit | 0.92 |
ENSDART00000091070
|
zgc:158403 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.7 | GO:0007286 | spermatid development(GO:0007286) |
0.4 | 1.8 | GO:0008356 | asymmetric cell division(GO:0008356) |
0.0 | 1.6 | GO:0030048 | actin filament-based movement(GO:0030048) |
0.1 | 1.3 | GO:0051256 | mitotic spindle elongation(GO:0000022) spindle elongation(GO:0051231) mitotic spindle midzone assembly(GO:0051256) |
0.1 | 1.1 | GO:2000223 | regulation of BMP signaling pathway involved in heart jogging(GO:2000223) |
0.2 | 1.0 | GO:0030576 | nuclear body organization(GO:0030575) Cajal body organization(GO:0030576) |
0.2 | 0.9 | GO:0010825 | positive regulation of centrosome duplication(GO:0010825) |
0.1 | 0.9 | GO:0060046 | binding of sperm to zona pellucida(GO:0007339) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344) |
0.2 | 0.8 | GO:0009957 | epidermal cell fate specification(GO:0009957) |
0.1 | 0.8 | GO:0061055 | myotome development(GO:0061055) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.9 | GO:0043296 | apical junction complex(GO:0043296) |
0.3 | 1.8 | GO:0005826 | actomyosin contractile ring(GO:0005826) |
0.1 | 1.3 | GO:1990023 | mitotic spindle midzone(GO:1990023) |
0.1 | 1.1 | GO:0071144 | SMAD2-SMAD3 protein complex(GO:0071144) |
0.0 | 1.1 | GO:0005871 | kinesin complex(GO:0005871) |
0.1 | 1.0 | GO:0015030 | Cajal body(GO:0015030) |
0.0 | 0.9 | GO:0005814 | centriole(GO:0005814) |
0.1 | 0.8 | GO:0071014 | post-mRNA release spliceosomal complex(GO:0071014) |
0.1 | 0.8 | GO:0031011 | Ino80 complex(GO:0031011) DNA helicase complex(GO:0033202) |
0.2 | 0.6 | GO:0005672 | transcription factor TFIIA complex(GO:0005672) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.7 | GO:0042803 | protein homodimerization activity(GO:0042803) |
0.1 | 1.1 | GO:0070411 | I-SMAD binding(GO:0070411) |
0.1 | 0.9 | GO:0032190 | acrosin binding(GO:0032190) |
0.0 | 0.8 | GO:0032813 | tumor necrosis factor receptor superfamily binding(GO:0032813) |
0.1 | 0.7 | GO:0004362 | glutathione-disulfide reductase activity(GO:0004362) |
0.1 | 0.7 | GO:0005113 | patched binding(GO:0005113) |
0.0 | 0.7 | GO:0102337 | fatty acid elongase activity(GO:0009922) 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
0.0 | 0.7 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.1 | 0.6 | GO:0052629 | phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629) |
0.1 | 0.5 | GO:0019865 | IgE binding(GO:0019863) immunoglobulin binding(GO:0019865) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.1 | PID ALK2 PATHWAY | ALK2 signaling events |
0.0 | 0.9 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
0.0 | 0.5 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
0.0 | 0.4 | PID NEPHRIN NEPH1 PATHWAY | Nephrin/Neph1 signaling in the kidney podocyte |
0.0 | 0.3 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.1 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |
0.0 | 1.0 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |
0.0 | 0.9 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |
0.0 | 0.9 | REACTOME NETRIN1 SIGNALING | Genes involved in Netrin-1 signaling |
0.1 | 0.8 | REACTOME HS GAG BIOSYNTHESIS | Genes involved in HS-GAG biosynthesis |
0.0 | 0.7 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.0 | 0.5 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |