PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
snai2 | dr11_v1_chr24_+_35387517_35387517 | 0.67 | 1.6e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_-_59313465 Show fit | 1.56 |
ENSDART00000158067
ENSDART00000159419 |
thioredoxin domain containing 11 |
|
chr4_-_77216726 Show fit | 1.45 |
ENSDART00000099943
|
proteasome subunit beta 10 |
|
chr7_+_20917966 Show fit | 1.43 |
ENSDART00000129161
|
WD repeat containing, antisense to TP53 |
|
chr6_-_130849 Show fit | 1.40 |
ENSDART00000108710
|
si:zfos-323e3.4 |
|
chr9_-_48370645 Show fit | 1.36 |
ENSDART00000140185
|
collagen, type XXVIII, alpha 2a |
|
chr19_-_35439237 Show fit | 1.35 |
ENSDART00000145883
|
anillin, actin binding protein |
|
chr10_-_94184 Show fit | 1.30 |
ENSDART00000146125
|
tetratricopeptide repeat domain 3 |
|
chr21_-_21465111 Show fit | 1.18 |
ENSDART00000141487
|
nectin cell adhesion molecule 3b |
|
chr9_+_15893093 Show fit | 1.11 |
ENSDART00000099483
ENSDART00000134657 |
si:dkey-14o1.20 |
|
chr5_+_22974019 Show fit | 1.10 |
ENSDART00000147157
ENSDART00000020434 |
bromodomain and WD repeat domain containing 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.9 | GO:0007286 | spermatid development(GO:0007286) |
0.2 | 1.6 | GO:0003428 | growth plate cartilage morphogenesis(GO:0003422) chondrocyte intercalation involved in growth plate cartilage morphogenesis(GO:0003428) |
0.1 | 1.6 | GO:0099560 | synaptic membrane adhesion(GO:0099560) |
0.3 | 1.4 | GO:0030575 | nuclear body organization(GO:0030575) Cajal body organization(GO:0030576) |
0.1 | 1.4 | GO:0035999 | tetrahydrofolate interconversion(GO:0035999) |
0.3 | 1.3 | GO:0008356 | asymmetric cell division(GO:0008356) |
0.0 | 1.1 | GO:0006261 | DNA-dependent DNA replication(GO:0006261) |
0.1 | 1.0 | GO:0045950 | negative regulation of mitotic recombination(GO:0045950) |
0.1 | 1.0 | GO:0099517 | anterograde synaptic vesicle transport(GO:0048490) synaptic vesicle cytoskeletal transport(GO:0099514) synaptic vesicle transport along microtubule(GO:0099517) |
0.1 | 1.0 | GO:0086003 | cardiac muscle cell contraction(GO:0086003) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.1 | GO:0043296 | apical junction complex(GO:0043296) |
0.1 | 1.6 | GO:0044666 | MLL3/4 complex(GO:0044666) |
0.1 | 1.4 | GO:0015030 | Cajal body(GO:0015030) |
0.2 | 1.3 | GO:0005826 | actomyosin contractile ring(GO:0005826) |
0.0 | 1.3 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
0.0 | 1.3 | GO:0005581 | collagen trimer(GO:0005581) |
0.0 | 1.2 | GO:0005871 | kinesin complex(GO:0005871) |
0.2 | 1.1 | GO:0005663 | DNA replication factor C complex(GO:0005663) |
0.0 | 1.0 | GO:0043195 | terminal bouton(GO:0043195) |
0.0 | 0.9 | GO:0005839 | proteasome core complex(GO:0005839) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.2 | GO:0004725 | protein tyrosine phosphatase activity(GO:0004725) |
0.0 | 2.1 | GO:0042803 | protein homodimerization activity(GO:0042803) |
0.1 | 2.0 | GO:0004298 | threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003) |
0.1 | 1.7 | GO:0042800 | histone methyltransferase activity (H3-K4 specific)(GO:0042800) |
0.2 | 1.4 | GO:0004329 | formate-tetrahydrofolate ligase activity(GO:0004329) |
0.0 | 1.2 | GO:0003777 | microtubule motor activity(GO:0003777) |
0.1 | 1.1 | GO:0003689 | DNA clamp loader activity(GO:0003689) protein-DNA loading ATPase activity(GO:0033170) |
0.0 | 0.9 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.3 | 0.8 | GO:0071885 | N-terminal protein N-methyltransferase activity(GO:0071885) |
0.2 | 0.8 | GO:0005412 | glucose:sodium symporter activity(GO:0005412) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | PID ATR PATHWAY | ATR signaling pathway |
0.0 | 1.0 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.0 | 0.8 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.0 | 0.7 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
0.0 | 0.7 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.0 | 0.6 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
0.0 | 0.6 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
0.1 | 0.5 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
0.0 | 0.5 | PID ALK2 PATHWAY | ALK2 signaling events |
0.0 | 0.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.5 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |
0.0 | 2.2 | REACTOME CDK MEDIATED PHOSPHORYLATION AND REMOVAL OF CDC6 | Genes involved in CDK-mediated phosphorylation and removal of Cdc6 |
0.1 | 1.0 | REACTOME RNA POL III CHAIN ELONGATION | Genes involved in RNA Polymerase III Chain Elongation |
0.0 | 1.0 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.1 | 0.7 | REACTOME RECRUITMENT OF NUMA TO MITOTIC CENTROSOMES | Genes involved in Recruitment of NuMA to mitotic centrosomes |
0.0 | 0.7 | REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE | Genes involved in Sema4D induced cell migration and growth-cone collapse |
0.0 | 0.7 | REACTOME PROCESSING OF INTRONLESS PRE MRNAS | Genes involved in Processing of Intronless Pre-mRNAs |
0.1 | 0.6 | REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS | Genes involved in Caspase-mediated cleavage of cytoskeletal proteins |
0.0 | 0.6 | REACTOME PYRIMIDINE METABOLISM | Genes involved in Pyrimidine metabolism |
0.0 | 0.6 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |