PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
sox10 | dr11_v1_chr3_+_1492174_1492174 | 0.37 | 1.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr22_+_14098028 Show fit | 3.55 |
ENSDART00000018432
|
hatching enzyme 1, tandem dupliate 2 |
|
chr13_+_33651416 Show fit | 3.51 |
ENSDART00000180221
|
|
|
chr1_-_33645967 Show fit | 1.56 |
ENSDART00000192758
|
claudin g |
|
chr14_+_16036139 Show fit | 1.54 |
ENSDART00000190733
|
PRELI domain containing 1a |
|
chr23_+_36144487 Show fit | 1.51 |
ENSDART00000082473
|
homeobox C3a |
|
chr5_-_61652254 Show fit | 1.44 |
ENSDART00000097364
|
draculin |
|
chr6_+_45932276 Show fit | 1.38 |
ENSDART00000103491
|
retinol binding protein 7b, cellular |
|
chr23_-_21471022 Show fit | 1.35 |
ENSDART00000104206
|
hairy-related 4, tandem duplicate 2 |
|
chr2_-_42960353 Show fit | 1.26 |
ENSDART00000098303
|
otoconin 90 |
|
chr22_-_10541372 Show fit | 1.25 |
ENSDART00000179708
|
si:dkey-42i9.4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 3.6 | GO:0035188 | hatching(GO:0035188) organism emergence from protective structure(GO:0071684) |
0.2 | 2.2 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.0 | 2.1 | GO:0045930 | negative regulation of mitotic cell cycle(GO:0045930) |
0.2 | 1.9 | GO:0034501 | protein localization to kinetochore(GO:0034501) protein localization to chromosome, centromeric region(GO:0071459) |
0.3 | 1.6 | GO:0016338 | calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules(GO:0016338) |
0.1 | 1.5 | GO:0048936 | peripheral nervous system neuron axonogenesis(GO:0048936) |
0.0 | 1.5 | GO:0002028 | regulation of sodium ion transport(GO:0002028) |
0.1 | 1.4 | GO:0050482 | icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) arachidonate transport(GO:1903963) |
0.1 | 1.4 | GO:0021594 | rhombomere formation(GO:0021594) |
0.0 | 1.4 | GO:0001702 | gastrulation with mouth forming second(GO:0001702) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.3 | GO:0031970 | mitochondrial intermembrane space(GO:0005758) organelle envelope lumen(GO:0031970) |
0.0 | 1.9 | GO:0016607 | nuclear speck(GO:0016607) |
0.1 | 1.6 | GO:0000314 | organellar small ribosomal subunit(GO:0000314) mitochondrial small ribosomal subunit(GO:0005763) |
0.0 | 1.5 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
0.1 | 1.3 | GO:0000940 | condensed chromosome outer kinetochore(GO:0000940) |
0.0 | 1.2 | GO:0005884 | actin filament(GO:0005884) |
0.2 | 1.1 | GO:0000445 | THO complex(GO:0000347) THO complex part of transcription export complex(GO:0000445) |
0.1 | 1.0 | GO:0045095 | keratin filament(GO:0045095) |
0.0 | 1.0 | GO:0016605 | PML body(GO:0016605) |
0.0 | 1.0 | GO:0032432 | actin filament bundle(GO:0032432) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.7 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.3 | 2.2 | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.0 | 2.0 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.3 | 1.8 | GO:0034632 | retinol transporter activity(GO:0034632) |
0.1 | 1.7 | GO:0004623 | phospholipase A2 activity(GO:0004623) |
0.2 | 1.5 | GO:1990050 | phosphatidic acid transporter activity(GO:1990050) |
0.0 | 1.5 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.1 | 1.3 | GO:0043515 | kinetochore binding(GO:0043515) |
0.1 | 1.2 | GO:0033691 | sialic acid binding(GO:0033691) |
0.1 | 1.2 | GO:0009982 | pseudouridine synthase activity(GO:0009982) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.2 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 1.6 | PID PS1 PATHWAY | Presenilin action in Notch and Wnt signaling |
0.0 | 1.6 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.0 | 1.5 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 0.8 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
0.0 | 0.6 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
0.0 | 0.6 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.0 | 0.5 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
0.0 | 0.5 | PID TRAIL PATHWAY | TRAIL signaling pathway |
0.0 | 0.5 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.0 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.1 | 2.3 | REACTOME MRNA 3 END PROCESSING | Genes involved in mRNA 3'-end processing |
0.1 | 1.1 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.1 | 1.0 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
0.1 | 0.8 | REACTOME BASE FREE SUGAR PHOSPHATE REMOVAL VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Base-free sugar-phosphate removal via the single-nucleotide replacement pathway |
0.0 | 0.8 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
0.0 | 0.8 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.0 | 0.8 | REACTOME INTEGRIN CELL SURFACE INTERACTIONS | Genes involved in Integrin cell surface interactions |
0.1 | 0.6 | REACTOME ENDOSOMAL VACUOLAR PATHWAY | Genes involved in Endosomal/Vacuolar pathway |
0.1 | 0.6 | REACTOME CLEAVAGE OF GROWING TRANSCRIPT IN THE TERMINATION REGION | Genes involved in Cleavage of Growing Transcript in the Termination Region |