PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
sox11b | dr11_v1_chr20_-_30035326_30035326 | -0.42 | 7.7e-02 | Click! |
sox11a | dr11_v1_chr17_-_35881841_35881841 | -0.39 | 9.7e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22240052 Show fit | 6.16 |
ENSDART00000111109
|
crystallin, gamma M2d9 |
|
chr5_-_26118855 Show fit | 5.44 |
ENSDART00000009028
|
elastase 3 like |
|
chr3_-_61205711 Show fit | 4.22 |
ENSDART00000055062
|
parvalbumin 1 |
|
chr19_-_21832441 Show fit | 3.23 |
ENSDART00000151272
ENSDART00000151442 ENSDART00000150168 ENSDART00000148797 ENSDART00000128196 ENSDART00000149259 ENSDART00000052556 ENSDART00000149658 ENSDART00000149639 ENSDART00000148424 |
myelin basic protein a |
|
chr18_+_25653599 Show fit | 3.05 |
ENSDART00000007856
|
FK506 binding protein 16 |
|
chr1_-_20928772 Show fit | 3.01 |
ENSDART00000078277
|
methylsterol monooxygenase 1 |
|
chr21_+_11401247 Show fit | 2.86 |
ENSDART00000143952
|
carboxyl ester lipase, tandem duplicate 1 |
|
chr13_+_24755049 Show fit | 2.81 |
ENSDART00000134102
|
collagen, type XVII, alpha 1b |
|
chr20_+_9128829 Show fit | 2.63 |
ENSDART00000064144
ENSDART00000137450 |
bisphosphate nucleotidase 1 |
|
chr2_+_52232630 Show fit | 2.57 |
ENSDART00000006216
|
phospholipid phosphatase 2a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.0 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.2 | 5.4 | GO:0046838 | phosphorylated carbohydrate dephosphorylation(GO:0046838) inositol phosphate dephosphorylation(GO:0046855) inositol phosphate catabolic process(GO:0071545) |
0.1 | 3.0 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
0.3 | 2.9 | GO:0097090 | presynaptic membrane organization(GO:0097090) postsynaptic membrane assembly(GO:0097104) presynaptic membrane assembly(GO:0097105) |
0.0 | 2.8 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.0 | 2.6 | GO:0046839 | phospholipid dephosphorylation(GO:0046839) |
0.7 | 2.2 | GO:0045671 | negative regulation of osteoclast differentiation(GO:0045671) |
0.2 | 2.2 | GO:0002154 | thyroid hormone mediated signaling pathway(GO:0002154) |
0.7 | 2.1 | GO:0015824 | proline transport(GO:0015824) |
0.1 | 2.1 | GO:0001757 | somite specification(GO:0001757) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 12.8 | GO:0005615 | extracellular space(GO:0005615) |
0.0 | 6.0 | GO:0009986 | cell surface(GO:0009986) |
0.0 | 4.9 | GO:0005874 | microtubule(GO:0005874) |
0.0 | 3.3 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.2 | 3.2 | GO:0043209 | myelin sheath(GO:0043209) |
0.1 | 2.3 | GO:0035371 | microtubule plus-end(GO:0035371) |
0.0 | 2.1 | GO:0016459 | myosin complex(GO:0016459) |
0.0 | 2.0 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.1 | 1.8 | GO:0005751 | mitochondrial respiratory chain complex IV(GO:0005751) |
0.1 | 1.5 | GO:0070775 | H3 histone acetyltransferase complex(GO:0070775) MOZ/MORF histone acetyltransferase complex(GO:0070776) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.2 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 6.0 | GO:0008017 | microtubule binding(GO:0008017) |
0.2 | 5.6 | GO:0008252 | nucleotidase activity(GO:0008252) |
0.0 | 5.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.2 | 3.2 | GO:0019911 | structural constituent of myelin sheath(GO:0019911) |
0.1 | 3.1 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
0.4 | 3.0 | GO:0000254 | C-4 methylsterol oxidase activity(GO:0000254) |
1.0 | 2.9 | GO:0004771 | sterol esterase activity(GO:0004771) |
0.0 | 2.8 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.1 | 2.6 | GO:0042577 | lipid phosphatase activity(GO:0042577) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.1 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
0.0 | 2.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 1.2 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 1.1 | PID REELIN PATHWAY | Reelin signaling pathway |
0.0 | 0.9 | PID LKB1 PATHWAY | LKB1 signaling events |
0.1 | 0.8 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.0 | 0.8 | PID FGF PATHWAY | FGF signaling pathway |
0.0 | 0.4 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 4.8 | REACTOME CYTOSOLIC SULFONATION OF SMALL MOLECULES | Genes involved in Cytosolic sulfonation of small molecules |
0.1 | 3.0 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.4 | 2.0 | REACTOME PURINE CATABOLISM | Genes involved in Purine catabolism |
0.1 | 1.8 | REACTOME RNA POL I PROMOTER OPENING | Genes involved in RNA Polymerase I Promoter Opening |
0.2 | 1.6 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.1 | 1.2 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.0 | 1.0 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.1 | 0.8 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.1 | 0.8 | REACTOME FGFR4 LIGAND BINDING AND ACTIVATION | Genes involved in FGFR4 ligand binding and activation |
0.0 | 0.5 | REACTOME N GLYCAN ANTENNAE ELONGATION | Genes involved in N-Glycan antennae elongation |