PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
sox12 | dr11_v1_chr11_-_24191928_24191928 | -0.30 | 2.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_+_41922114 Show fit | 3.43 |
ENSDART00000138280
|
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase |
|
chr9_+_15893093 Show fit | 1.79 |
ENSDART00000099483
ENSDART00000134657 |
si:dkey-14o1.20 |
|
chr8_-_16697615 Show fit | 1.65 |
ENSDART00000187929
|
retinal pigment epithelium-specific protein 65b |
|
chr2_-_31833347 Show fit | 1.56 |
ENSDART00000109460
|
nucleolar protein 7 |
|
chr16_-_9897613 Show fit | 1.53 |
ENSDART00000104058
|
neurocalcin delta a |
|
chr7_-_24995631 Show fit | 1.51 |
ENSDART00000173955
ENSDART00000173791 |
REST corepressor 2 |
|
chr11_+_6115621 Show fit | 1.48 |
ENSDART00000165031
ENSDART00000027666 ENSDART00000161458 |
nuclear receptor subfamily 2, group F, member 6b |
|
chr4_-_2945306 Show fit | 1.48 |
ENSDART00000128934
ENSDART00000019518 |
AE binding protein 2 |
|
chr8_-_16697912 Show fit | 1.33 |
ENSDART00000076542
|
retinal pigment epithelium-specific protein 65b |
|
chr22_+_21618121 Show fit | 1.31 |
ENSDART00000133939
|
transducin like enhancer of split 2a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.6 | GO:0000122 | negative regulation of transcription from RNA polymerase II promoter(GO:0000122) |
0.9 | 3.4 | GO:0016109 | tetraterpenoid metabolic process(GO:0016108) tetraterpenoid biosynthetic process(GO:0016109) carotenoid metabolic process(GO:0016116) carotenoid biosynthetic process(GO:0016117) xanthophyll metabolic process(GO:0016122) xanthophyll biosynthetic process(GO:0016123) zeaxanthin metabolic process(GO:1901825) zeaxanthin biosynthetic process(GO:1901827) |
0.6 | 3.4 | GO:0055016 | hypochord development(GO:0055016) |
0.0 | 1.5 | GO:0016575 | histone deacetylation(GO:0016575) |
0.0 | 1.3 | GO:0008286 | insulin receptor signaling pathway(GO:0008286) |
0.0 | 1.3 | GO:0090090 | negative regulation of canonical Wnt signaling pathway(GO:0090090) |
0.1 | 1.2 | GO:0034205 | Notch receptor processing(GO:0007220) beta-amyloid formation(GO:0034205) amyloid precursor protein catabolic process(GO:0042987) |
0.1 | 1.2 | GO:0006474 | N-terminal protein amino acid acetylation(GO:0006474) |
0.1 | 1.1 | GO:0016926 | protein desumoylation(GO:0016926) |
0.0 | 1.1 | GO:0006289 | nucleotide-excision repair(GO:0006289) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.4 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
0.0 | 2.6 | GO:0000118 | histone deacetylase complex(GO:0000118) |
0.2 | 2.3 | GO:0035098 | ESC/E(Z) complex(GO:0035098) |
0.0 | 1.4 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.2 | 1.2 | GO:0070765 | gamma-secretase complex(GO:0070765) |
0.2 | 1.1 | GO:0000439 | core TFIIH complex(GO:0000439) |
0.1 | 1.1 | GO:0071339 | MLL1/2 complex(GO:0044665) MLL1 complex(GO:0071339) |
0.0 | 1.1 | GO:0030864 | cortical actin cytoskeleton(GO:0030864) |
0.1 | 1.0 | GO:0071005 | U2-type precatalytic spliceosome(GO:0071005) |
0.1 | 0.9 | GO:0016586 | RSC complex(GO:0016586) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 3.4 | GO:0052885 | retinol isomerase activity(GO:0050251) all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity(GO:0052885) |
0.9 | 3.4 | GO:0033829 | O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity(GO:0033829) |
0.0 | 2.8 | GO:0004879 | RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding(GO:0004879) |
0.0 | 2.7 | GO:0003682 | chromatin binding(GO:0003682) |
0.0 | 2.2 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.0 | 1.7 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.0 | 1.3 | GO:0070491 | repressing transcription factor binding(GO:0070491) |
0.0 | 1.2 | GO:0031491 | nucleosome binding(GO:0031491) |
0.1 | 1.1 | GO:0016929 | SUMO-specific protease activity(GO:0016929) |
0.1 | 1.1 | GO:0051019 | mitogen-activated protein kinase binding(GO:0051019) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.6 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
0.0 | 1.6 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.1 | 1.2 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.1 | 0.9 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.0 | 0.9 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.0 | 0.7 | PID TRAIL PATHWAY | TRAIL signaling pathway |
0.0 | 0.6 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.0 | 0.5 | SIG IL4RECEPTOR IN B LYPHOCYTES | Genes related to IL4 rceptor signaling in B lymphocytes |
0.0 | 0.5 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 0.4 | PID TXA2PATHWAY | Thromboxane A2 receptor signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.4 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
0.1 | 1.2 | REACTOME SIGNALING BY NOTCH4 | Genes involved in Signaling by NOTCH4 |
0.1 | 1.2 | REACTOME CONVERSION FROM APC C CDC20 TO APC C CDH1 IN LATE ANAPHASE | Genes involved in Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase |
0.1 | 1.1 | REACTOME FORMATION OF THE HIV1 EARLY ELONGATION COMPLEX | Genes involved in Formation of the HIV-1 Early Elongation Complex |
0.0 | 1.0 | REACTOME AUTODEGRADATION OF CDH1 BY CDH1 APC C | Genes involved in Autodegradation of Cdh1 by Cdh1:APC/C |
0.2 | 0.9 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |
0.1 | 0.9 | REACTOME MICRORNA MIRNA BIOGENESIS | Genes involved in MicroRNA (miRNA) Biogenesis |
0.0 | 0.8 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
0.1 | 0.7 | REACTOME EXTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Extrinsic Pathway for Apoptosis |
0.0 | 0.6 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |