PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
sox13 | dr11_v1_chr11_+_37768298_37768298 | 0.54 | 1.7e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr13_-_24448278 Show fit | 4.80 |
ENSDART00000057584
|
solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 |
|
chr12_-_20340543 Show fit | 3.64 |
ENSDART00000055623
|
hemoglobin beta embryonic-3 |
|
chr23_-_42232124 Show fit | 3.29 |
ENSDART00000149944
|
glutathione peroxidase 7 |
|
chr22_-_36530902 Show fit | 2.29 |
ENSDART00000056188
|
info polymerase (RNA) II (DNA directed) polypeptide H |
|
chr24_+_22485710 Show fit | 2.24 |
ENSDART00000146058
|
si:dkey-40h20.1 |
|
chr4_+_57101749 Show fit | 2.21 |
ENSDART00000135121
|
si:ch211-238e22.4 |
|
chr20_-_27225876 Show fit | 2.17 |
ENSDART00000149204
ENSDART00000149732 |
si:dkey-85n7.7 |
|
chr14_+_5383060 Show fit | 2.10 |
ENSDART00000187825
|
ladybird homeobox 2 |
|
chr19_-_32928470 Show fit | 1.99 |
ENSDART00000141404
ENSDART00000050750 |
ribonucleotide reductase M2 b |
|
chr12_+_47663419 Show fit | 1.97 |
ENSDART00000171932
|
hematopoietically expressed homeobox |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.6 | GO:0015671 | oxygen transport(GO:0015671) |
0.0 | 3.7 | GO:0006364 | rRNA processing(GO:0006364) |
0.3 | 3.1 | GO:0009188 | ribonucleoside diphosphate biosynthetic process(GO:0009188) |
0.0 | 2.5 | GO:0006457 | protein folding(GO:0006457) |
0.2 | 2.3 | GO:0006490 | oligosaccharide-lipid intermediate biosynthetic process(GO:0006490) |
0.2 | 2.2 | GO:0051123 | RNA polymerase II transcriptional preinitiation complex assembly(GO:0051123) |
0.4 | 2.1 | GO:1904105 | positive regulation of convergent extension involved in gastrulation(GO:1904105) |
0.2 | 2.0 | GO:0098787 | mRNA cleavage involved in mRNA processing(GO:0098787) pre-mRNA cleavage required for polyadenylation(GO:0098789) |
0.2 | 2.0 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.0 | 1.9 | GO:0007062 | sister chromatid cohesion(GO:0007062) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 4.6 | GO:0031838 | haptoglobin-hemoglobin complex(GO:0031838) |
0.0 | 4.6 | GO:0000139 | Golgi membrane(GO:0000139) |
0.0 | 3.2 | GO:0000785 | chromatin(GO:0000785) |
0.3 | 2.8 | GO:0005665 | DNA-directed RNA polymerase II, core complex(GO:0005665) |
0.2 | 2.6 | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex(GO:0005847) |
0.1 | 2.6 | GO:0005637 | nuclear inner membrane(GO:0005637) |
0.3 | 2.3 | GO:0097550 | transcriptional preinitiation complex(GO:0097550) |
0.1 | 2.2 | GO:0042555 | MCM complex(GO:0042555) |
0.1 | 2.0 | GO:0000940 | condensed chromosome outer kinetochore(GO:0000940) |
0.0 | 2.0 | GO:0036064 | ciliary basal body(GO:0036064) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 31.5 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
0.4 | 4.6 | GO:0031720 | haptoglobin binding(GO:0031720) |
0.0 | 3.4 | GO:0003682 | chromatin binding(GO:0003682) |
0.2 | 3.3 | GO:0004602 | glutathione peroxidase activity(GO:0004602) |
0.1 | 3.3 | GO:0019003 | GDP binding(GO:0019003) |
0.0 | 3.1 | GO:0051082 | unfolded protein binding(GO:0051082) |
0.0 | 3.1 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.1 | 3.0 | GO:0017056 | structural constituent of nuclear pore(GO:0017056) |
0.0 | 2.8 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 2.4 | GO:0003724 | RNA helicase activity(GO:0003724) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.5 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.1 | 2.2 | PID EPHB FWD PATHWAY | EPHB forward signaling |
0.1 | 1.8 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
0.0 | 1.6 | PID P53 REGULATION PATHWAY | p53 pathway |
0.0 | 1.3 | SIG CHEMOTAXIS | Genes related to chemotaxis |
0.0 | 1.3 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.1 | 1.2 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.0 | 1.2 | PID MYC PATHWAY | C-MYC pathway |
0.0 | 1.2 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 1.0 | PID BARD1 PATHWAY | BARD1 signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.8 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.2 | 3.8 | REACTOME MICRORNA MIRNA BIOGENESIS | Genes involved in MicroRNA (miRNA) Biogenesis |
0.1 | 3.5 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.2 | 3.3 | REACTOME PROCESSING OF INTRONLESS PRE MRNAS | Genes involved in Processing of Intronless Pre-mRNAs |
0.1 | 3.3 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
0.1 | 3.3 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |
0.1 | 2.9 | REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION | Genes involved in Cyclin E associated events during G1/S transition |
0.1 | 2.8 | REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT | Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript |
0.0 | 2.4 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
0.1 | 2.3 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |