PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
sox17 | dr11_v1_chr7_-_58776400_58776400 | 0.77 | 1.0e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22213297 Show fit | 1.79 |
ENSDART00000110656
ENSDART00000133149 |
crystallin, gamma M2d20 |
|
chr24_-_14712427 Show fit | 1.76 |
ENSDART00000176316
|
junctophilin 1a |
|
chr9_-_22240052 Show fit | 1.72 |
ENSDART00000111109
|
crystallin, gamma M2d9 |
|
chr18_+_1837668 Show fit | 1.51 |
ENSDART00000164210
|
|
|
chr9_-_22299412 Show fit | 1.42 |
ENSDART00000139101
|
crystallin, gamma M2d21 |
|
chr21_+_11385031 Show fit | 1.40 |
ENSDART00000040598
|
carboxyl ester lipase, tandem duplicate 2 |
|
chr5_+_1278092 Show fit | 1.30 |
ENSDART00000147972
ENSDART00000159783 |
dynamin 1a |
|
chr7_+_26100024 Show fit | 1.23 |
ENSDART00000173726
|
si:ch211-196f2.3 |
|
chr5_+_67812062 Show fit | 1.20 |
ENSDART00000158611
|
zgc:175280 |
|
chr2_+_45636034 Show fit | 1.18 |
ENSDART00000142230
|
fibronectin type III domain containing 7, related sequence 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.9 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.1 | 1.7 | GO:0051127 | positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601) |
0.1 | 1.6 | GO:0098884 | postsynaptic neurotransmitter receptor internalization(GO:0098884) |
0.1 | 1.4 | GO:0097104 | presynaptic membrane organization(GO:0097090) postsynaptic membrane assembly(GO:0097104) presynaptic membrane assembly(GO:0097105) |
0.0 | 1.2 | GO:0009636 | response to toxic substance(GO:0009636) |
0.2 | 1.1 | GO:1903826 | L-arginine import(GO:0043091) amino acid import across plasma membrane(GO:0089718) arginine import(GO:0090467) L-arginine import across plasma membrane(GO:0097638) L-arginine transport(GO:1902023) L-arginine import into cell(GO:1902765) amino acid import into cell(GO:1902837) L-arginine transmembrane transport(GO:1903400) arginine transmembrane transport(GO:1903826) |
0.0 | 1.1 | GO:0030282 | bone mineralization(GO:0030282) |
0.2 | 1.0 | GO:0034498 | early endosome to Golgi transport(GO:0034498) |
0.0 | 1.0 | GO:1901379 | regulation of potassium ion transmembrane transport(GO:1901379) |
0.0 | 1.0 | GO:0006368 | transcription elongation from RNA polymerase II promoter(GO:0006368) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 1.8 | GO:0030314 | junctional membrane complex(GO:0030314) |
0.1 | 1.7 | GO:0031209 | SCAR complex(GO:0031209) |
0.1 | 1.6 | GO:0098844 | postsynaptic endocytic zone membrane(GO:0098844) |
0.0 | 1.5 | GO:0031941 | filamentous actin(GO:0031941) |
0.0 | 1.2 | GO:0034705 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
0.0 | 1.2 | GO:0016459 | myosin complex(GO:0016459) |
0.2 | 1.0 | GO:1990071 | TRAPPII protein complex(GO:1990071) |
0.2 | 1.0 | GO:0030891 | VCB complex(GO:0030891) |
0.1 | 0.9 | GO:0005952 | cAMP-dependent protein kinase complex(GO:0005952) |
0.0 | 0.9 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.7 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 1.8 | GO:0033691 | sialic acid binding(GO:0033691) |
0.6 | 1.7 | GO:0004031 | aldehyde oxidase activity(GO:0004031) oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor(GO:0016623) |
0.2 | 1.7 | GO:0071933 | Arp2/3 complex binding(GO:0071933) |
0.5 | 1.4 | GO:0004771 | sterol esterase activity(GO:0004771) |
0.4 | 1.2 | GO:0015562 | protein-transmembrane transporting ATPase activity(GO:0015462) efflux transmembrane transporter activity(GO:0015562) |
0.0 | 1.2 | GO:0008195 | phosphatidate phosphatase activity(GO:0008195) |
0.2 | 1.1 | GO:0015189 | L-lysine transmembrane transporter activity(GO:0015189) |
0.0 | 1.1 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.1 | 1.0 | GO:0010314 | phosphatidylinositol-5-phosphate binding(GO:0010314) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.9 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.0 | 0.8 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.0 | 0.5 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.0 | 0.5 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.1 | 0.4 | ST TYPE I INTERFERON PATHWAY | Type I Interferon (alpha/beta IFN) Pathway |
0.0 | 0.3 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.0 | 0.3 | SIG IL4RECEPTOR IN B LYPHOCYTES | Genes related to IL4 rceptor signaling in B lymphocytes |
0.0 | 0.3 | SIG CD40PATHWAYMAP | Genes related to CD40 signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.7 | REACTOME BASIGIN INTERACTIONS | Genes involved in Basigin interactions |
0.1 | 0.9 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.3 | 0.8 | REACTOME ACETYLCHOLINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Acetylcholine Neurotransmitter Release Cycle |
0.1 | 0.7 | REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS | Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors) |
0.2 | 0.6 | REACTOME GLUTAMATE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Glutamate Neurotransmitter Release Cycle |
0.0 | 0.6 | REACTOME PYRUVATE METABOLISM | Genes involved in Pyruvate metabolism |
0.0 | 0.5 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
0.0 | 0.5 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.0 | 0.4 | REACTOME REGULATION OF IFNA SIGNALING | Genes involved in Regulation of IFNA signaling |
0.0 | 0.3 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |