PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
sox18 | dr11_v1_chr23_+_8797143_8797143 | 0.15 | 5.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr23_+_42482137 Show fit | 1.63 |
ENSDART00000160199
|
cytochrome P450, family 2, subfamily AA, polypeptide 3 |
|
chr21_+_8341774 Show fit | 1.18 |
ENSDART00000129749
ENSDART00000055325 ENSDART00000133804 |
proteasome subunit beta 7 |
|
chr19_+_15440841 Show fit | 1.14 |
ENSDART00000182329
|
lin-28 homolog A (C. elegans) |
|
chr18_-_40905901 Show fit | 1.06 |
ENSDART00000064848
|
peptidoglycan recognition protein 5 |
|
chr11_-_28614608 Show fit | 1.05 |
ENSDART00000065853
|
dehydrogenase/reductase (SDR family) member 3b |
|
chr7_+_24814866 Show fit | 1.02 |
ENSDART00000173581
|
si:ch211-226l4.6 |
|
chr8_+_23726708 Show fit | 1.01 |
ENSDART00000142395
|
makorin, ring finger protein, 4 |
|
chr4_+_30776883 Show fit | 0.99 |
ENSDART00000169519
|
si:dkey-11d20.1 |
|
chr7_-_24995631 Show fit | 0.93 |
ENSDART00000173955
ENSDART00000173791 |
REST corepressor 2 |
|
chr5_-_30704390 Show fit | 0.91 |
ENSDART00000016709
|
intraflagellar transport 22 homolog (Chlamydomonas) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | GO:0017144 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.2 | 1.3 | GO:0000455 | enzyme-directed rRNA pseudouridine synthesis(GO:0000455) |
0.0 | 1.2 | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process(GO:0010499) |
0.2 | 1.1 | GO:0000270 | peptidoglycan metabolic process(GO:0000270) peptidoglycan catabolic process(GO:0009253) |
0.1 | 1.1 | GO:0042572 | retinol metabolic process(GO:0042572) |
0.0 | 1.0 | GO:0006119 | oxidative phosphorylation(GO:0006119) |
0.0 | 0.9 | GO:0016575 | histone deacetylation(GO:0016575) |
0.1 | 0.8 | GO:0003160 | endocardium morphogenesis(GO:0003160) |
0.2 | 0.7 | GO:0010265 | SCF complex assembly(GO:0010265) |
0.2 | 0.7 | GO:0060829 | negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation(GO:0060829) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | GO:0090544 | BAF-type complex(GO:0090544) |
0.0 | 1.2 | GO:0005839 | proteasome core complex(GO:0005839) |
0.1 | 0.9 | GO:0030992 | intraciliary transport particle B(GO:0030992) |
0.0 | 0.9 | GO:0000118 | histone deacetylase complex(GO:0000118) |
0.0 | 0.8 | GO:0005811 | lipid particle(GO:0005811) |
0.0 | 0.7 | GO:1990907 | beta-catenin-TCF complex(GO:1990907) |
0.0 | 0.6 | GO:0042555 | MCM complex(GO:0042555) |
0.0 | 0.6 | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex(GO:0005847) |
0.0 | 0.6 | GO:0032040 | small-subunit processome(GO:0032040) |
0.1 | 0.5 | GO:0043073 | germ cell nucleus(GO:0043073) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.3 | GO:0009982 | pseudouridine synthase activity(GO:0009982) |
0.0 | 1.3 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.1 | 1.2 | GO:0004298 | threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003) |
0.3 | 1.1 | GO:0008745 | N-acetylmuramoyl-L-alanine amidase activity(GO:0008745) |
0.1 | 1.1 | GO:0004745 | retinol dehydrogenase activity(GO:0004745) |
0.0 | 1.0 | GO:0015002 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
0.0 | 0.9 | GO:0008013 | beta-catenin binding(GO:0008013) |
0.1 | 0.8 | GO:0016922 | ligand-dependent nuclear receptor binding(GO:0016922) |
0.1 | 0.8 | GO:0005025 | transforming growth factor beta receptor activity, type I(GO:0005025) |
0.0 | 0.7 | GO:0019870 | chloride channel inhibitor activity(GO:0019869) potassium channel inhibitor activity(GO:0019870) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 0.6 | PID BMP PATHWAY | BMP receptor signaling |
0.0 | 0.5 | PID ALK2 PATHWAY | ALK2 signaling events |
0.0 | 0.5 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES | Genes involved in Cross-presentation of soluble exogenous antigens (endosomes) |
0.0 | 0.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.0 | 0.5 | REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS | Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs |
0.0 | 0.5 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |
0.0 | 0.5 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.0 | 0.4 | REACTOME INHIBITION OF REPLICATION INITIATION OF DAMAGED DNA BY RB1 E2F1 | Genes involved in Inhibition of replication initiation of damaged DNA by RB1/E2F1 |