PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
sox19a | dr11_v1_chr5_-_24201437_24201437 | 0.42 | 7.0e-02 | Click! |
sox2 | dr11_v1_chr22_-_37349967_37349967 | 0.12 | 6.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_-_43092175 Show fit | 5.32 |
ENSDART00000084389
|
leucine rich repeat neuronal 1 |
|
chr3_-_30158395 Show fit | 4.60 |
ENSDART00000103502
|
si:ch211-152f23.5 |
|
chr23_-_21471022 Show fit | 4.46 |
ENSDART00000104206
|
hairy-related 4, tandem duplicate 2 |
|
chr23_+_21459263 Show fit | 3.69 |
ENSDART00000104209
|
hairy-related 4, tandem duplicate 3 |
|
chr14_-_26704829 Show fit | 3.49 |
ENSDART00000078563
|
neurogenin 1 |
|
chr19_+_43017931 Show fit | 3.27 |
ENSDART00000132213
|
sodium/potassium transporting ATPase interacting 1 |
|
chr2_+_26179096 Show fit | 3.16 |
ENSDART00000024662
|
phospholipid phosphatase related 3a |
|
chr20_-_48485354 Show fit | 3.07 |
ENSDART00000124040
ENSDART00000148437 |
insulinoma-associated 1a |
|
chr7_-_17028015 Show fit | 3.03 |
ENSDART00000022441
|
developing brain homeobox 1a |
|
chr23_-_21463788 Show fit | 2.82 |
ENSDART00000079265
|
hairy-related 4, tandem duplicate 4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 37.4 | GO:0006357 | regulation of transcription from RNA polymerase II promoter(GO:0006357) |
0.7 | 15.0 | GO:0048936 | peripheral nervous system neuron axonogenesis(GO:0048936) |
0.1 | 12.2 | GO:0043484 | regulation of RNA splicing(GO:0043484) |
0.1 | 11.5 | GO:0007160 | cell-matrix adhesion(GO:0007160) |
0.0 | 10.7 | GO:0048704 | embryonic skeletal system morphogenesis(GO:0048704) |
0.0 | 10.6 | GO:0045892 | negative regulation of transcription, DNA-templated(GO:0045892) |
0.2 | 8.9 | GO:0002028 | regulation of sodium ion transport(GO:0002028) |
0.5 | 7.3 | GO:0048096 | chromatin-mediated maintenance of transcription(GO:0048096) |
0.7 | 7.0 | GO:0060579 | ventral spinal cord interneuron fate commitment(GO:0060579) |
0.0 | 5.8 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 145.5 | GO:0005634 | nucleus(GO:0005634) |
0.2 | 9.3 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.1 | 7.2 | GO:0005814 | centriole(GO:0005814) |
0.1 | 6.5 | GO:0032432 | actin filament bundle(GO:0032432) |
0.0 | 5.7 | GO:0005667 | transcription factor complex(GO:0005667) |
0.0 | 5.3 | GO:0016607 | nuclear speck(GO:0016607) |
0.0 | 4.6 | GO:0000775 | chromosome, centromeric region(GO:0000775) |
0.2 | 4.4 | GO:0035102 | PRC1 complex(GO:0035102) |
0.1 | 4.4 | GO:0016605 | PML body(GO:0016605) |
0.0 | 4.0 | GO:0031012 | extracellular matrix(GO:0031012) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 54.1 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
0.0 | 24.5 | GO:0046983 | protein dimerization activity(GO:0046983) |
0.1 | 22.6 | GO:0003682 | chromatin binding(GO:0003682) |
0.0 | 15.0 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
0.0 | 10.5 | GO:0003677 | DNA binding(GO:0003677) |
0.0 | 10.4 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
0.1 | 8.4 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.0 | 8.1 | GO:0003712 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
0.1 | 7.9 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
0.1 | 7.4 | GO:0008094 | DNA-dependent ATPase activity(GO:0008094) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 11.2 | PID E2F PATHWAY | E2F transcription factor network |
0.4 | 5.7 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.1 | 4.7 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 4.4 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 4.4 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.2 | 4.3 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.1 | 3.8 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.2 | 2.5 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
0.1 | 2.1 | PID ATR PATHWAY | ATR signaling pathway |
0.1 | 1.8 | ST DIFFERENTIATION PATHWAY IN PC12 CELLS | Differentiation Pathway in PC12 Cells; this is a specific case of PAC1 Receptor Pathway. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.9 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.1 | 5.5 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.2 | 3.5 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.1 | 3.4 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.2 | 3.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.2 | 2.7 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
0.1 | 2.7 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
0.1 | 2.7 | REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT | Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript |
0.1 | 2.7 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
0.2 | 2.2 | REACTOME FGFR4 LIGAND BINDING AND ACTIVATION | Genes involved in FGFR4 ligand binding and activation |