PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
sox19b | dr11_v1_chr7_-_26497947_26497947 | -0.26 | 2.8e-01 | Click! |
sox3 | dr11_v1_chr14_-_32744464_32744464 | 0.14 | 5.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_-_30615901 Show fit | 3.33 |
ENSDART00000147769
|
si:ch211-117m20.5 |
|
chr9_-_22232902 Show fit | 2.74 |
ENSDART00000101845
|
crystallin, gamma M2d5 |
|
chr9_-_22318511 Show fit | 2.68 |
ENSDART00000129295
|
crystallin, gamma M2d2 |
|
chr10_+_44042033 Show fit | 2.63 |
ENSDART00000190006
ENSDART00000046172 |
crystallin, beta A4 |
|
chr9_-_22129788 Show fit | 2.59 |
ENSDART00000124272
ENSDART00000175417 |
crystallin, gamma M2d8 |
|
chr9_-_22182396 Show fit | 2.58 |
ENSDART00000101809
|
crystallin, gamma M2d6 |
|
chr9_-_22339582 Show fit | 2.54 |
ENSDART00000134805
|
crystallin, gamma M2d1 |
|
chr9_-_22240052 Show fit | 2.39 |
ENSDART00000111109
|
crystallin, gamma M2d9 |
|
chr4_+_16323970 Show fit | 2.37 |
ENSDART00000190651
|
|
|
chr9_-_22272181 Show fit | 2.22 |
ENSDART00000113174
|
crystallin, gamma M2d7 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 32.7 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.3 | 3.1 | GO:0060573 | ventral spinal cord interneuron specification(GO:0021521) cell fate specification involved in pattern specification(GO:0060573) |
0.2 | 2.9 | GO:1990089 | response to nerve growth factor(GO:1990089) cellular response to nerve growth factor stimulus(GO:1990090) |
0.2 | 2.8 | GO:0016102 | diterpenoid biosynthetic process(GO:0016102) |
0.3 | 2.3 | GO:0060221 | retinal rod cell differentiation(GO:0060221) |
0.0 | 2.3 | GO:0030510 | regulation of BMP signaling pathway(GO:0030510) |
0.0 | 2.0 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.0 | 2.0 | GO:0002028 | regulation of sodium ion transport(GO:0002028) |
0.2 | 1.9 | GO:0048681 | negative regulation of axon regeneration(GO:0048681) negative regulation of neuron projection regeneration(GO:0070571) |
0.3 | 1.8 | GO:0022410 | circadian sleep/wake cycle process(GO:0022410) circadian sleep/wake cycle(GO:0042745) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.3 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 3.8 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
0.0 | 2.6 | GO:0005942 | phosphatidylinositol 3-kinase complex(GO:0005942) |
0.1 | 1.6 | GO:0005839 | proteasome core complex(GO:0005839) |
0.1 | 1.5 | GO:0033202 | Ino80 complex(GO:0031011) DNA helicase complex(GO:0033202) |
0.0 | 1.5 | GO:0005882 | intermediate filament(GO:0005882) |
0.1 | 1.4 | GO:0044295 | axonal growth cone(GO:0044295) |
0.3 | 1.3 | GO:0097433 | dense body(GO:0097433) |
0.0 | 1.3 | GO:0016607 | nuclear speck(GO:0016607) |
0.1 | 1.2 | GO:1990907 | beta-catenin-TCF complex(GO:1990907) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 31.6 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 2.6 | GO:0046935 | 1-phosphatidylinositol-3-kinase regulator activity(GO:0046935) |
0.2 | 2.5 | GO:0005504 | fatty acid binding(GO:0005504) |
0.1 | 2.0 | GO:0008301 | DNA binding, bending(GO:0008301) |
0.0 | 1.9 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.0 | 1.9 | GO:0004879 | RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding(GO:0004879) |
0.1 | 1.8 | GO:0005163 | nerve growth factor receptor binding(GO:0005163) neurotrophin receptor binding(GO:0005165) |
0.0 | 1.7 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
0.1 | 1.6 | GO:0070003 | threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003) |
0.1 | 1.5 | GO:0030172 | troponin C binding(GO:0030172) troponin I binding(GO:0031013) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.2 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 1.5 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
0.0 | 1.4 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 1.3 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.0 | 1.2 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.0 | 1.2 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
0.0 | 1.1 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
0.1 | 1.0 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.1 | 0.8 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.0 | 0.8 | PID TRAIL PATHWAY | TRAIL signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.3 | REACTOME SCF BETA TRCP MEDIATED DEGRADATION OF EMI1 | Genes involved in SCF-beta-TrCP mediated degradation of Emi1 |
0.2 | 2.0 | REACTOME KERATAN SULFATE DEGRADATION | Genes involved in Keratan sulfate degradation |
0.0 | 1.9 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.0 | 1.5 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.1 | 1.4 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
0.1 | 1.0 | REACTOME SIGNALING BY NOTCH4 | Genes involved in Signaling by NOTCH4 |
0.1 | 1.0 | REACTOME INSULIN RECEPTOR RECYCLING | Genes involved in Insulin receptor recycling |
0.0 | 1.0 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.1 | 0.8 | REACTOME CD28 DEPENDENT VAV1 PATHWAY | Genes involved in CD28 dependent Vav1 pathway |
0.1 | 0.8 | REACTOME EXTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Extrinsic Pathway for Apoptosis |