PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
sox21b | dr11_v1_chr9_+_53276356_53276356 | -0.76 | 1.4e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_-_33154677 Show fit | 1.94 |
ENSDART00000133300
|
zinc finger and BTB domain containing 34 |
|
chr14_+_49135264 Show fit | 1.76 |
ENSDART00000084119
|
si:ch1073-44g3.1 |
|
chr3_+_39540014 Show fit | 1.21 |
ENSDART00000074848
|
zgc:165423 |
|
chr17_-_277046 Show fit | 1.09 |
ENSDART00000182587
|
|
|
chr21_-_42007213 Show fit | 1.05 |
ENSDART00000188804
ENSDART00000092821 ENSDART00000165743 |
gamma-aminobutyric acid (GABA) A receptor, gamma 2 |
|
chr16_+_37582872 Show fit | 1.05 |
ENSDART00000169331
|
adhesion G protein-coupled receptor B1a |
|
chr4_+_75200467 Show fit | 1.04 |
ENSDART00000122593
|
|
|
chr4_+_18804317 Show fit | 1.00 |
ENSDART00000101043
|
solute carrier family 26 (anion exchanger), member 3, tandem duplicate 2 |
|
chr11_+_23993298 Show fit | 0.99 |
ENSDART00000186757
ENSDART00000172459 |
chitinase, acidic.1 |
|
chr21_-_42007482 Show fit | 0.98 |
ENSDART00000075740
|
gamma-aminobutyric acid (GABA) A receptor, gamma 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 2.0 | GO:0070208 | protein heterotrimerization(GO:0070208) |
0.1 | 1.8 | GO:0016525 | negative regulation of angiogenesis(GO:0016525) |
0.1 | 1.1 | GO:0046051 | UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051) |
0.1 | 1.0 | GO:0006032 | chitin catabolic process(GO:0006032) |
0.0 | 1.0 | GO:0015701 | bicarbonate transport(GO:0015701) |
0.0 | 0.8 | GO:0007019 | microtubule depolymerization(GO:0007019) |
0.1 | 0.7 | GO:0006108 | malate metabolic process(GO:0006108) |
0.0 | 0.7 | GO:0070534 | protein K63-linked ubiquitination(GO:0070534) |
0.0 | 0.6 | GO:0007212 | dopamine receptor signaling pathway(GO:0007212) |
0.1 | 0.5 | GO:0010807 | regulation of synaptic vesicle priming(GO:0010807) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.7 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 1.0 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.1 | 0.5 | GO:0070044 | synaptobrevin 2-SNAP-25-syntaxin-1a complex(GO:0070044) |
0.0 | 0.4 | GO:0070776 | H3 histone acetyltransferase complex(GO:0070775) MOZ/MORF histone acetyltransferase complex(GO:0070776) |
0.0 | 0.3 | GO:0098894 | presynaptic endocytic zone(GO:0098833) presynaptic endocytic zone membrane(GO:0098835) extrinsic component of presynaptic membrane(GO:0098888) extrinsic component of presynaptic endocytic zone(GO:0098894) |
0.0 | 0.3 | GO:0005964 | phosphorylase kinase complex(GO:0005964) |
0.0 | 0.1 | GO:0071595 | Nem1-Spo7 phosphatase complex(GO:0071595) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.3 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.1 | 2.0 | GO:0008503 | benzodiazepine receptor activity(GO:0008503) GABA-gated chloride ion channel activity(GO:0022851) |
0.0 | 1.1 | GO:0004550 | nucleoside diphosphate kinase activity(GO:0004550) |
0.1 | 1.0 | GO:0004568 | chitinase activity(GO:0004568) |
0.1 | 1.0 | GO:0019531 | oxalate transmembrane transporter activity(GO:0019531) |
0.1 | 0.8 | GO:0005483 | soluble NSF attachment protein activity(GO:0005483) |
0.2 | 0.7 | GO:0015105 | arsenite transmembrane transporter activity(GO:0015105) |
0.2 | 0.7 | GO:0004470 | malic enzyme activity(GO:0004470) malate dehydrogenase (decarboxylating) (NAD+) activity(GO:0004471) malate dehydrogenase (decarboxylating) (NADP+) activity(GO:0004473) |
0.0 | 0.7 | GO:0004890 | GABA-A receptor activity(GO:0004890) |
0.0 | 0.6 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.7 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.0 | 0.4 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
0.0 | 0.4 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 0.2 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.0 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.0 | 0.5 | REACTOME AMINE DERIVED HORMONES | Genes involved in Amine-derived hormones |
0.1 | 0.4 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |
0.1 | 0.4 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.0 | 0.4 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.0 | 0.4 | REACTOME METABOLISM OF STEROID HORMONES AND VITAMINS A AND D | Genes involved in Metabolism of steroid hormones and vitamins A and D |
0.0 | 0.2 | REACTOME RAF MAP KINASE CASCADE | Genes involved in RAF/MAP kinase cascade |
0.0 | 0.2 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |