PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
sox5 | dr11_v1_chr4_-_17055950_17055950 | -0.44 | 5.9e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22339582 Show fit | 3.61 |
ENSDART00000134805
|
crystallin, gamma M2d1 |
|
chr9_-_22135420 Show fit | 1.90 |
ENSDART00000184959
|
crystallin, gamma M2d8 |
|
chr20_-_47704973 Show fit | 1.82 |
ENSDART00000174808
|
transcription factor AP-2 beta |
|
chr9_-_22272181 Show fit | 1.64 |
ENSDART00000113174
|
crystallin, gamma M2d7 |
|
chr13_+_25449681 Show fit | 1.46 |
ENSDART00000101328
|
atonal bHLH transcription factor 7 |
|
chr22_-_10487490 Show fit | 1.41 |
ENSDART00000064798
|
asporin (LRR class 1) |
|
chr1_-_30689004 Show fit | 1.40 |
ENSDART00000018827
|
dachshund c |
|
chr3_-_30158395 Show fit | 1.34 |
ENSDART00000103502
|
si:ch211-152f23.5 |
|
chr24_+_24461558 Show fit | 1.29 |
ENSDART00000182424
|
basic helix-loop-helix family, member e22 |
|
chr24_+_24461341 Show fit | 1.27 |
ENSDART00000147658
|
basic helix-loop-helix family, member e22 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.7 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.1 | 1.7 | GO:0010508 | positive regulation of autophagy(GO:0010508) |
0.2 | 1.4 | GO:0060017 | parathyroid gland development(GO:0060017) |
0.1 | 1.2 | GO:0051489 | regulation of filopodium assembly(GO:0051489) |
0.0 | 1.2 | GO:0006942 | regulation of striated muscle contraction(GO:0006942) |
0.2 | 1.1 | GO:0010718 | positive regulation of epithelial to mesenchymal transition(GO:0010718) |
0.1 | 1.1 | GO:0021588 | cerebellum formation(GO:0021588) |
0.0 | 1.1 | GO:0048010 | vascular endothelial growth factor receptor signaling pathway(GO:0048010) |
0.0 | 1.1 | GO:0036269 | swimming behavior(GO:0036269) |
0.1 | 1.0 | GO:0071376 | response to corticotropin-releasing hormone(GO:0043435) cellular response to corticotropin-releasing hormone stimulus(GO:0071376) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.9 | GO:0005667 | transcription factor complex(GO:0005667) |
0.0 | 1.2 | GO:0030027 | lamellipodium(GO:0030027) |
0.1 | 1.0 | GO:0031680 | G-protein beta/gamma-subunit complex(GO:0031680) |
0.0 | 1.0 | GO:0016605 | PML body(GO:0016605) |
0.0 | 1.0 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 1.0 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.0 | 1.0 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
0.0 | 0.9 | GO:0000795 | synaptonemal complex(GO:0000795) |
0.1 | 0.8 | GO:0005915 | cell-cell adherens junction(GO:0005913) zonula adherens(GO:0005915) |
0.1 | 0.8 | GO:0044295 | axonal growth cone(GO:0044295) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.2 | GO:0046983 | protein dimerization activity(GO:0046983) |
0.1 | 5.5 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 2.8 | GO:0005518 | collagen binding(GO:0005518) |
0.1 | 2.1 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
0.0 | 1.9 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.1 | 1.1 | GO:0070122 | isopeptidase activity(GO:0070122) |
0.1 | 1.0 | GO:0031013 | troponin C binding(GO:0030172) troponin I binding(GO:0031013) |
0.1 | 1.0 | GO:0035259 | glucocorticoid receptor binding(GO:0035259) |
0.0 | 1.0 | GO:0043176 | amine binding(GO:0043176) serotonin binding(GO:0051378) |
0.0 | 1.0 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.3 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 1.1 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
0.0 | 1.0 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 0.8 | PID REELIN PATHWAY | Reelin signaling pathway |
0.0 | 0.6 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.0 | 0.4 | PID S1P S1P4 PATHWAY | S1P4 pathway |
0.0 | 0.4 | PID INTEGRIN CS PATHWAY | Integrin family cell surface interactions |
0.0 | 0.3 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
0.0 | 0.2 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
0.0 | 0.2 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.1 | REACTOME INHIBITION OF INSULIN SECRETION BY ADRENALINE NORADRENALINE | Genes involved in Inhibition of Insulin Secretion by Adrenaline/Noradrenaline |
0.0 | 1.1 | REACTOME PIP3 ACTIVATES AKT SIGNALING | Genes involved in PIP3 activates AKT signaling |
0.1 | 0.9 | REACTOME CS DS DEGRADATION | Genes involved in CS/DS degradation |
0.0 | 0.9 | REACTOME AMINE COMPOUND SLC TRANSPORTERS | Genes involved in Amine compound SLC transporters |
0.1 | 0.8 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
0.1 | 0.7 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.0 | 0.5 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.0 | 0.5 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.0 | 0.5 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.0 | 0.5 | REACTOME NETRIN1 SIGNALING | Genes involved in Netrin-1 signaling |